1      -     51
UN26145        --> GGAAAACCTGGGCAGTGAAACGAAGACTTTCGAAGCAACACAGAAGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- ..................................................
EV529974       <-- ..................................................
FD555274       <-- ..................................................
EX766391       <-- ..................................................
FD555017       <-- ..................................................
FD553199       <-- ..................................................
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> GGAAAACCTTTGCAGTGAAACGAAGACTTTCGAAGCAACACAGAAGCGAA
EV570015       --> .........GGGCAGTGAAACGAAGACTTTCGAAGCAACACAGAAGCGAA
EY939721       --> .........GGGCAGTGAAACGAAGACTTTCGAAGCAACACAGAAGCGAA
FD572100       --> .........GGGCAGTGAAACGAAGACTTTCGAAGCAACACAGAAGCGAA
EY922550       --> ...........ggAGTGAAACGAAGACTTTCGAAGCAACACAGAAGCGAA
EY924636       --> .............AGTGAAACGAAGACTTTCGAAGCAACACAGAAGCGAA
FD559286       --> ..................................................
EV525155       --> ..................................................
EX762026       --> ..................................................

               51     -    101
UN26145        --> ACCATGGCGGATTTGGAAGATGTTCAAACTGTGGATCTCATGTCCGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- ..................................................
EV529974       <-- ..................................................
FD555274       <-- ..................................................
EX766391       <-- ..................................................
FD555017       <-- ..................................................
FD553199       <-- ..................................................
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> ACCATGGCGGATTTGGAAGATGTTCAAACTGTGGATCTCATGTCCGAGCT
EV570015       --> ACCATGGCGGATTTGGAAGATGTTCAAACTGTGGATCTCATGTCCGAGCT
EY939721       --> ACCATGGCGGATTTGGAAGATGTTCAAACTGTGGATCTCATGTCCGAGCT
FD572100       --> ACCATGGCGGATTTGGAAGATGTTCAAACTGTGGATCTCATGTCCGAGCT
EY922550       --> ACCATGGCGGATTTGGAAGATGTTCAAACTGTGGATCTCATGTCCGAGCT
EY924636       --> ACCATGGCGGATTTGGAAGA-ATTCAAACTGTGGATCTCATGTCCGAGCT
FD559286       --> .ggATGGCGGATTTGGAAGATGTTCAAACTGTGGATCTCATGTCCGAGCT
EV525155       --> ..................................................
EX762026       --> ..................................................

               101    -    151
UN26145        --> CCTCCGCCGCCTCAAATGTGCACAAAAGCCTGACAAACGCCTCATCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- ..................................................
EV529974       <-- ..................................................
FD555274       <-- ..................................................
EX766391       <-- ..................................................
FD555017       <-- ..................................................
FD553199       <-- ..................................................
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> CCTCCGCCGCCTCAAATGTGCACAAAAGCCTGACAAACGCCTCATCTTCA
EV570015       --> CCTCCGCCGCCTCAAATGTGCACAAAAGCCTGACAAACGCCTCATCTTCA
EY939721       --> CCTCCGCCGCCTCAAATGTGCACAAAAGCCTGACAAACGCCTCATCTTCA
FD572100       --> CCTCCGCCGCCTCAAATGTGCACAAAAGCCTGACAAACGCCTCATCTTCA
EY922550       --> CCTCCGCCGCCTCAAATGTGCACAAAAGCCTGACAAACGCCTCATCTTCA
EY924636       --> CCTCCGCCGCCTCAAATGTGCACAAAAGCCTGACAAACGCCTCATCTTCA
FD559286       --> CCTCCGCCGCCTCAAATGTGCACAAAAGCCTGACAAACGCCTCATCTTCA
EV525155       --> ..................................................
EX762026       --> ..................................................

               151    -    201
UN26145        --> TTGGACCTCCAGGGTCAGGGAAAGGTACACAATCTCCCATAGTGAAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- ..........................ACACAATCTCCCATAGTGAAGGAT
EV529974       <-- ..................................................
FD555274       <-- ..................................................
EX766391       <-- ..................................................
FD555017       <-- ..................................................
FD553199       <-- ..................................................
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> TTGGACCTCCAGGGTCAGGGAAAGGTGCACAATCTCCAATAGTGAAGGAT
EV570015       --> TCGGACCTCCAGGGTCAGGGAAAGGTACACAATCTCCAATAGTGAAGGAT
EY939721       --> TTGGACCTCCAGGGTCAGGGAAAGG-ACACAATCTCCCAT..........
FD572100       --> TTGGACCTCCAGGGTCAGGGAAAGGTACACAATCTCCCATAGTGAAGGAT
EY922550       --> TTGGACCTCCAGGGTCAGGGAAAGGTACACAATCTCCCATAGTGAAGGAT
EY924636       --> TTGGACCTCCAGGGTCAGGGAAAGGTACACAATCTCCAATAGTGAAGGAT
FD559286       --> TTGGACCTCCAGGGTCAGGGAAAGGTACACAATCTCCCATAGTGAAGGAT
EV525155       --> ..................................................
EX762026       --> ..................................................

               201    -    251
UN26145        --> GAGTATTGCTTGTGTCACTTATCCACTGGCGACATGTTAAGAGCTGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- GAGTATTTCTTGTGTCACTTATCCACTGGTGACATGTTAAGAGCTGCTGT
EV529974       <-- ..................................................
FD555274       <-- ..................................................
EX766391       <-- ..................................................
FD555017       <-- ..................................................
FD553199       <-- ..................................................
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> GAGTATTGCTTGTGTCATTTATCCACTGGCGACATGTTAAGAGCTGCTGT
EV570015       --> GAGTATTGCTTGTGTCATTTATCCACTGGCGACATGTTAAGAGCTGCTGT
EY939721       --> ..................................................
FD572100       --> GAGTATTGCTTGTGTCACTTATCCACTGGCGACATGTTGAGGGCTGCTGT
EY922550       --> GAGTATTTCTTGTGTCACTTATCCACTGGTGACATGTTAAGAGCTGCTGT
EY924636       --> GAGTATTGCTTGTGTCATTTATCCACTGGCGACATGTTAAGAGCTGCTGT
FD559286       --> GAGTATTGCTTGTGTCACTTATCCACTGGTGACATGTTAAGAGCTGCTGT
EV525155       --> ..................................................
EX762026       --> ..................................................

               251    -    301
UN26145        --> TGCTTCTAAGACCCCTCTTGGTCTCAAGGCCAAAGAAGCTATGGACAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- TGCTTCTAAGACCCCTCTTGGTCTCAAGGCCAAAGAAGCTATGGACAAGG
EV529974       <-- ..................................................
FD555274       <-- ..................................................
EX766391       <-- ..................................................
FD555017       <-- ..................................................
FD553199       <-- ..................................................
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> TGCTTCTAAGACCCCTCTTGGTCTCAAGGCCAAAGAAGCTATGGACAAGG
EV570015       --> TGCTTCTAAGACCCCTCTTGGTCTCAAGGCCAAAGAAGCTATGGACAAGG
EY939721       --> ..................................................
FD572100       --> TGCTTCTAAGACCCCTCTTGGTCTCAAGGCCAAAGAAGCTATGGACAAGG
EY922550       --> TGCTTCTAAGACCCCTCTTGGTCTCAAGGCCAAAGAAGCTATGGACAAGG
EY924636       --> TGCTTCTAAGACCCCTCTTGGTCTCAAGGCCAAAGAAGCTATGGACAAGG
FD559286       --> TGCTTCTAAGACCCCTCTTGGTCTCAAGGCCAAAGAAGCTATGGACAAGG
EV525155       --> ..................................................
EX762026       --> ..................................................

               301    -    351
UN26145        --> GAGCGCTTGTCACTGATGAGTTGGTTGTTGGTATAATTGATGAAGCCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- GAGCGCTTGTCACTGATGAGTTGGTTGTTGGTATAATTGATGGAGCCATG
EV529974       <-- ..................gGTTGGTTGTTGGTATAATTGATGAAGCCATG
FD555274       <-- ..................accctcttggtctcaaggccaaaGAAGCTATG
EX766391       <-- ..................................................
FD555017       <-- ..................................................
FD553199       <-- ..................................................
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> GAGCGCTTGTCACTGATGAGTTGGTTGTTGGTATAATTGATGAAGCCATG
EV570015       --> GAGCGCTTGTCACTGATGAGTTGGTTGTTGGTATAATTGATGAAGCCATG
EY939721       --> ..................................................
FD572100       --> GAGCGCTTGTCACTGATGAGTTGGTTGTTGGTATAATTGATGAAGCCATG
EY922550       --> GAGCGCTTGTCACTGATGAGTTGGTTGTTGGTATAATTGATGGAGCCATG
EY924636       --> GAGCGCTTGTCACTGATGAGTTGGTTGTTGGTATAATTGATGAAGCCATG
FD559286       --> GAGCGCTTGTCACTGATGAGTTGGTTGTTGGTATAATTGATGAAGCCATG
EV525155       --> ..................gGTTGGTTGTTGGTATAATTGATGAAGCCATG
EX762026       --> ..................................................

               351    -    401
UN26145        --> AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
EV529974       <-- AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
FD555274       <-- GACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
EX766391       <-- ..................................................
FD555017       <-- ..................................................
FD553199       <-- ..................................................
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
EV570015       --> AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
EY939721       --> ..................................................
FD572100       --> AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
EY922550       --> AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
EY924636       --> AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
FD559286       --> AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
EV525155       --> AACAAGCCAAAATGCCAGAAAGGTTTCATCCTTGATGGGTTTCCCAGGAC
EX762026       --> ..................................................

               401    -    451
UN26145        --> TGTTGCTCAGGCAGAGAAGCTAGATGAGATGCTTAAGAAGCGTGGAACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- TGTTGCTCAGGCAGAGAAGCTAGATGAGATGCTTAAGAAGCGTGGAACTG  Raphanus raphanistrum subsp. landra
EV529974       <-- TGTTGCTCAGGCAGAGAAGCTAGATGAGATGCTTAAGAAGCGTGGAACTG  Raphanus raphanistrum subsp. maritimus
FD555274       <-- GGTTGCTCAGGCAGAGAAGCTAGATGAGATGCTTAAGAAGCGTGGAACTG  Raphanus raphanistrum subsp. landra
EX766391       <-- .....................................gAGCGGGGGACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555017       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553199       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY909751       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920253       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX763672       --> TGTTGCTCAGGCAGAGAAGCTAGACGAGATGCTTAAGAAGCGGGGGACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570015       --> TGTTGCTCAGGCAGAGAAGCTAGACGAGATGCTTAAGAAGCGAGGGACTG  Raphanus raphanistrum subsp. landra
EY939721       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD572100       --> TGTTGCTCAGGCAGAGAAGCTAGACGAGATGCTTAAGAAGCGGGGGGCTG  Raphanus sativus cv Early Scarlet Globe
EY922550       --> TGTTGCTCAGGCAGAGAAGCTAGATGAGATGCTTAAGAAGCGTGGAACTG  Raphanus raphanistrum subsp. landra
EY924636       --> TGTTGCTCAGGCAGAGAAGCTAGACGAGATGCTTAAGAAGCGGGGGACTG  Raphanus raphanistrum subsp. landra
FD559286       --> TGTTGCTCAGGCAGAGAAGCTAGATGAGATGCTTAAGAAGCGTGGAACTG  Raphanus raphanistrum subsp. landra
EV525155       --> TGTTGCTCAGGCAGAGAAGCTAGATGAGATGCTTAAGAAGCGTGGAACTG  Raphanus raphanistrum subsp. maritimus
EX762026       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN26145        --> GAATCGACAAAGTTCTCAACTTTGCCATCGATGACTCAGTTCTGGAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- GAATCGACAAAGTTCTCAACTTTGCCATCGATGACTCAGTTCTGGAGGAA  Raphanus raphanistrum subsp. landra
EV529974       <-- GAATCGACAAAGTTCTCAACTTTGCCATCGATGACTCAGTTCTGGAGGAA  Raphanus raphanistrum subsp. maritimus
FD555274       <-- GAATCGACAAAGTTCTCAACTTTGCCATCGATGACTCAGTTCTGGAGGAA  Raphanus raphanistrum subsp. landra
EX766391       <-- GAATCGACAAAGTTCTCAACTTTGCTATTGATGGCTCAGTCCTGGAGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555017       <-- GAATCGACAAAGTTCTCAACTTTGCCATCGATGACTCAGTTCTGGAGGAA  Raphanus raphanistrum subsp. landra
FD553199       <-- ..............................................GGAA  Raphanus raphanistrum subsp. landra
EY909751       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920253       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX763672       --> GAATCGACAAAGTTCTCAACTTTGCTATTGATGACTCAGTCCTGGAGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570015       --> GAATCGACAAAGTTCTCAACTTTGCTATTGATGACTCAGTCCTGGAGGAA  Raphanus raphanistrum subsp. landra
EY939721       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD572100       --> GAATCGACAAAGTTCTCAACTTTGCTATTGATGACTCAGTCCTGGAGGAA  Raphanus sativus cv Early Scarlet Globe
EY922550       --> GAATCGACAAAGTTCTCAACTTTGCCATCGATGACTCAGTTCTGGAGGAA  Raphanus raphanistrum subsp. landra
EY924636       --> GAATCGACAAAGTTCTCAACTTTGCTATTGATGACTCAGTCCTGGAGGAA  Raphanus raphanistrum subsp. landra
FD559286       --> GAATCGACAAAGTTCTCAACTTTGCCATCGATGACTCAGTTCTGGAGGAA  Raphanus raphanistrum subsp. landra
EV525155       --> GAATCGACAAAGTTCTCAACTTTGCCATCGATGACTCAGTTCTGGAGGAA  Raphanus raphanistrum subsp. maritimus
EX762026       --> ..ATCGACAAAGTTCTCAACTTTGCTATTGATGGCTCAGTCCTGGAGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN26145        --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGTAGTTACCACAC
EV529974       <-- AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
FD555274       <-- AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
EX766391       <-- AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
FD555017       <-- AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
FD553199       <-- AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
EV570015       --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
EY939721       --> ..................................................
FD572100       --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTGCCACAT
EY922550       --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGTAGTTACCACAC
EY924636       --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
FD559286       --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
EV525155       --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC
EX762026       --> AGAATAACCGGGAGATGGATCCACCCATCGAGTGGCAGGAGTTACCACAC

               551    -    601
UN26145        --> CAAGTTTGCCCCTCCCAAGACCCCTGGAGTTGATGATATCACCGGAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- CAAGTTTGCCCCTCCCAAGACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. landra
EV529974       <-- CAAGTTTGCCCCTCCCAAGACCTCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. maritimus
FD555274       <-- CAAGTTTGCCCCTCCCAAGACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. landra
EX766391       <-- CAAGTTCGCCCCTCCCAAAACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555017       <-- CAAGTTTGCCCCTCCCAAGACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. landra
FD553199       <-- CAAGTTTGCCCCTCCCAAGACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. landra
EY909751       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920253       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX763672       --> CAAGTTCGCCCCTCCCAAAACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570015       --> CAAGTTCGCCCCTCCCAAAACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. landra
EY939721       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD572100       --> CAAGTTCGCCCCTCCCAAAACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus sativus cv Early Scarlet Globe
EY922550       --> CAAGTTTGCCCCTCCCAAGACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. landra
EY924636       --> CAAGTTCGCCCCTCCCAAAACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. landra
FD559286       --> CAAGTTTGCCCCTCCCAAGACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. landra
EV525155       --> CAAGTTTGCCCCTCCCAAGACCTCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. maritimus
EX762026       --> CAAGTTCGCCCCTCCCAAAACCCCTGGAGTTGATGATATCACCGGAGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN26145        --> CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTT  Raphanus raphanistrum subsp. landra
EV529974       <-- CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTT  Raphanus raphanistrum subsp. maritimus
FD555274       <-- CTCTGGTCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTT  Raphanus raphanistrum subsp. landra
EX766391       <-- CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555017       <-- CTTTGATCCAACGCAAAGATGATAATGCTGAGGTTTTAAGGTCGAGGCTT  Raphanus raphanistrum subsp. landra
FD553199       <-- CTCTGGTCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTT  Raphanus raphanistrum subsp. landra
EY909751       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920253       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX763672       --> CTCTGATCCAACGCAA-GATGATAATGCT.....................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570015       --> CTCTGATCCAACGCAAAGAT---AATGCTGAGGTTCTAAGGTCGAGGCTC  Raphanus raphanistrum subsp. landra
EY939721       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD572100       --> CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTGAGGTCGAGGCTC  Raphanus sativus cv Early Scarlet Globe
EY922550       --> CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTT  Raphanus raphanistrum subsp. landra
EY924636       --> CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTC  Raphanus raphanistrum subsp. landra
FD559286       --> CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTT  Raphanus raphanistrum subsp. landra
EV525155       --> CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTT  Raphanus raphanistrum subsp. maritimus
EX762026       --> CTCTGATCCAACGCAAAGATGATAATGCTGAGGTTCTAAGGTCGAGGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN26145        --> GCTGCTTTCCACAGTCAAACTGAACCGGTGATTGACTATTACGGGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- GCTGCTTTCCACAGTCAAACTGAACCGGTGATTGACTATTACGGGAAGAA  Raphanus raphanistrum subsp. landra
EV529974       <-- GCTGCTTTCCACAGTCAAACTGAACCGGTGATTGACTATTACGGGAAGAA  Raphanus raphanistrum subsp. maritimus
FD555274       <-- GCTGCTTTCCACAGTCAAACCGAACCGGTGATTGACTATTACGGGAAGAA  Raphanus raphanistrum subsp. landra
EX766391       <-- GCTGCGTTCCACAGTCAAACTGAATCGGTGATCGACTACTACGGAAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555017       <-- GTTGCTTTCCACAGTCAAACTGAACCGGTGATTGACTATTACGGGAAGAA  Raphanus raphanistrum subsp. landra
FD553199       <-- GCTGCTTTCCACAGTCAAACCGAACCGGTGATTGACTATTACGGGAAGAA  Raphanus raphanistrum subsp. landra
EY909751       <-- .................................GACTACTACGGAAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920253       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX763672       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570015       --> GCTGCGTTCCACAGTCAAACTGAACCGGTGATCGACTACTACGGAAAGAA  Raphanus raphanistrum subsp. landra
EY939721       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD572100       --> GCTGCGTTCCACAGTCAAACTGAACCGGTGATCGACTACTACGGAAAGAA  Raphanus sativus cv Early Scarlet Globe
EY922550       --> GCTGCTTTCCACAGTCAAACTGAACCGGTGATTGACTATTACGGGAAGAA  Raphanus raphanistrum subsp. landra
EY924636       --> GCTGCGTTCCACAGTCAAACTGAACCGGTGATCGACTAct..........  Raphanus raphanistrum subsp. landra
FD559286       --> GTTGCTTTCCACAGTCAAACTGAACCGGTGATTGACTATTACGGGAAGAA  Raphanus raphanistrum subsp. landra
EV525155       --> GCTGCTTTCCACAGTCAAACTGAACCGGTGATTGACTATTACGGGAAGAA  Raphanus raphanistrum subsp. maritimus
EX762026       --> GCTGCGTTCCACAGTCAAACTGAATCGGTGATCGACTACTACGGAAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN26145        --> GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EV529974       <-- GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
FD555274       <-- GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EX766391       <-- GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
FD555017       <-- GTCTGTTTTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
FD553199       <-- GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EY909751       <-- GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EY920253       <-- ..................................................
EX763672       --> ..................................................
EV570015       --> GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EY939721       --> ..................................................
FD572100       --> GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EY922550       --> GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EY924636       --> ..................................................
FD559286       --> GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EV525155       --> GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT
EX762026       --> GTCTGTTCTTACAAACATCCACGCCGAGAAGCCTCCCAAAGAAGTGACAT

               751    -    801
UN26145        --> CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
EV529974       <-- CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
FD555274       <-- CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
EX766391       <-- CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
FD555017       <-- CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
FD553199       <-- CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
EY909751       <-- CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
EY920253       <-- ..................................................
EX763672       --> ..................................................
EV570015       --> CAGAG-TTCAAAAAGCATTGTCCTGATGATGAAG-CTCAAGCAGTCATCT
EY939721       --> ..................................................
FD572100       --> C.................................................
EY922550       --> CAGAG-TTCAAAA-GCATTGTCCTGAT.......................
EY924636       --> ..................................................
FD559286       --> CAGAG-TTCAA.......................................
EV525155       --> CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT
EX762026       --> CAGAGGTTCAAAAAGCATTGTCCTGATGATGAAGGCTCAAGCAGTCATCT

               801    -    851
UN26145        --> CCTCTGGTTAGAAATCCATTCTTTTTCCTTCCTACGAGAGAGACGAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- CCTCTGGTTAGAAATCCATTCTTTTTCCTTCCTACGAGAGAGACGAACAC
EV529974       <-- CCTCTGGTTAGAAATCCATTATTTTTCCTTCCTACGAGAGAGACGAACAC
FD555274       <-- CCTCTGGTTAGAAATCCATTCTTTTTCCTTCCTACGAGAGAGACGAACAC
EX766391       <-- CCTCTGGTTAGAAATCCATTCTTTTTCCTTCCTACAATAGAGACGAACAC
FD555017       <-- CCTCTGGTTAGAAATCCATTCTTTTTCCTTCCTACGAGAGAGACGAACAC
FD553199       <-- CCTCTGGTTAGAAATCCATTCTTTTTCCTTCCTACGAGAGAGACGAACAC
EY909751       <-- CCTCTGGTTAGAAATCCATTCTTTTTCCTTCATACAAGAGAGACGAACAC
EY920253       <-- ..................................................
EX763672       --> ..................................................
EV570015       --> CCTCTGGTTAGAAATCCATTCTTTTT........................
EY939721       --> ..................................................
FD572100       --> ..................................................
EY922550       --> ..................................................
EY924636       --> ..................................................
FD559286       --> ..................................................
EV525155       --> CCTCTGGTTAGAAATCCATTATTTTTCCTTCCTACGAGAGAGACGAACAC
EX762026       --> CCTCTGGTTAGAAATCCATTCTTTTTCCTTCCTACAATAGAGACGAACAC

               851    -    901
UN26145        --> ATCTATATATCTACTCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- ATCTATATATCTACTCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT
EV529974       <-- ATCTATATATCTACTCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT
FD555274       <-- ATCTATATATCTACTCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT
EX766391       <-- ATCTATATATCTACTCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT
FD555017       <-- ATCTATATATCTACTCATTTGCGGAATGACAGTTTTTTTAGTCTTTTGTT
FD553199       <-- ATCTATATATCTACTCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT
EY909751       <-- ATCTATATATCTACTCATTTGCGGAATGACAGTTCT..............
EY920253       <-- ..............TCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT
EX763672       --> ..................................................
EV570015       --> ..................................................
EY939721       --> ..................................................
FD572100       --> ..................................................
EY922550       --> ..................................................
EY924636       --> ..................................................
FD559286       --> ..................................................
EV525155       --> ATCTATATATCTACTCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT
EX762026       --> ATCTATATATCTACTCATCTGCGGAATGACAGTTCTTTTAGTCTTTTGTT

               901    -    951
UN26145        --> CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
EV529974       <-- CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
FD555274       <-- CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
EX766391       <-- CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
FD555017       <-- CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
FD553199       <-- CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
EY909751       <-- ..................................................
EY920253       <-- CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
EX763672       --> ..................................................
EV570015       --> ..................................................
EY939721       --> ..................................................
FD572100       --> ..................................................
EY922550       --> ..................................................
EY924636       --> ..................................................
FD559286       --> ..................................................
EV525155       --> CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA
EX762026       --> CGACTTTGTTTTTTAAAACATGGCAAAAATAATTGATACTTTGGATCGAA

               951    -   1001
UN26145        --> ACGATCTTGAATACTCTCTTTTGTCTCCTGTCTAACGCAGGAGTTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- ACGATCTTGAATACTCTCTTTTGTCTCCTGTCTAACGCAGGAGTTCTc..
EV529974       <-- AC................................................
FD555274       <-- ACGATCTTGAATACTCTCTTTTGTCTCCTGTCTAACGCAGGAGTTCTTCT
EX766391       <-- ACGATCTTGAATACTCc.................................
FD555017       <-- ACGATCTTGAATACTTTCTTTTGTCTCCTGTCTAACGCAGGAGTTTTTCT
FD553199       <-- ACGATCTTGAATACTCTCTTTTGTCTCCTGTCTAACGCAGGAGTTCTTCT
EY909751       <-- ..................................................
EY920253       <-- ACGATCTTGAATACTTTCTTT.............................
EX763672       --> ..................................................
EV570015       --> ..................................................
EY939721       --> ..................................................
FD572100       --> ..................................................
EY922550       --> ..................................................
EY924636       --> ..................................................
FD559286       --> ..................................................
EV525155       --> AC................................................
EX762026       --> ACGATCTTGAATACTCc.................................

               1001   -   1051
UN26145        --> TTTCTGCAGCTTCTTTGCATTCCTCTTTCTCTTTATAAACAGATTGACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918493       <-- ..................................................
EV529974       <-- ..................................................
FD555274       <-- TTTCTGCAGCTTCTTTGCATTCCTCTTTCTCTTTATAAACAGATTGACGT
EX766391       <-- ..................................................
FD555017       <-- TTTTTGC...........................................
FD553199       <-- TTTCTGCAGCTTCTTTGCATTCCTCTTTCTCTTTATAAACAGATTGACGT
EY909751       <-- ..................................................
EY920253       <-- ..................................................
EX763672       --> ..................................................
EV570015       --> ..................................................
EY939721       --> ..................................................
FD572100       --> ..................................................
EY922550       --> ..................................................
EY924636       --> ..................................................
FD559286       --> ..................................................
EV525155       --> ..................................................
EX762026       --> ..................................................

               1051   -   1101
UN26145        --> GAAAGCCT
                   ~~~~~~~~
EY918493       <-- ........
EV529974       <-- ........
FD555274       <-- GAAAGCCT
EX766391       <-- ........
FD555017       <-- ........
FD553199       <-- GAAAGCCT
EY909751       <-- ........
EY920253       <-- ........
EX763672       --> ........
EV570015       --> ........
EY939721       --> ........
FD572100       --> ........
EY922550       --> ........
EY924636       --> ........
FD559286       --> ........
EV525155       --> ........
EX762026       --> ........