Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN26181

               -3     -     47
UN26181        --> ....GTCCTTTCGAATAAAGTAAAGAGTTTGGGGGAAGACCGGAGATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..............................GGGGGAAGACCGGAGATGAC
FD547108       <-- ..................................................
EV533113       <-- ..................................................
EV529349       --> gggtGTCCTTTCGAATAAAGTAAAGAGTTTGGGGGAAGACCGGAGATGAC
FD551213       --> ..ggGTCCTTTCGAATAAAGTAAAGAGTTTGGGGGAAGACCGGAGATGAC
EX903772       --> ...................ggAAAGAGTTTGGGAGAAGACCGGAGATGAC
FD965655       --> .............................gGGGGGAAGACCGGAGATGAC

               47     -     97
UN26181        --> GGTGAGACAGAAAGCTATGTCGACGTTGCCGAAGCTGATTCGAGCCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- GGTGAGACAGAAAGCTATGTCGACGTTGCCGAAGCTGATTCGAGCCATGA
FD547108       <-- .....................................ATTCGAGCCATGA
EV533113       <-- ..................................................
EV529349       --> GGTGAGACAGAAAGCTATGTCGACGTTGCCGAAGCTGATTCGAGCCATGA
FD551213       --> GGTTAGACAGAAAGCTATGTCGACGTTGCCGAGGCTGATTCGAGCCATGA
EX903772       --> GGTGAGACAGAAAGCTATGTCGACGTTGCCGAAGCTGATTCGAGCCATGA
FD965655       --> GGTGAGACAGAAAGCTATGTCGACGTTGCCGAAGCTGATTCGAGCCATGA

               97     -    147
UN26181        --> GAAAGGAAGCTCCCAAGCAGCAGCAAAGCCTCGTCTTGCCATCTCTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- GAAAGGAAGCTCCCAAGCAGCAGCAAAGCCTCGTCTTGCCATCTCTGAGA
FD547108       <-- GAAAGGAAGCTCCCAAGCAGCAGCAAAGCCTCGTCTTGCCATCTCTGAGA
EV533113       <-- ..................................................
EV529349       --> GAAAGGAAGCTCCCAAGCAGCAGCAAAGCCTCGTCTTGCCATCTCTGAGA
FD551213       --> GAAAGGAAGCTCCCAAGCAGCAGCAAAGCCTCGTCTTGCCATCTCTGAGA
EX903772       --> GAAAGGAAGCTCCCAAGCAGCAGCAAAACCTCGTCTTGCCATCTCTGAGA
FD965655       --> GAAAGGAAGCTCCCAAGCAGCAGCAAAGCCTCGTCTTGCCATCTCTGAGA

               147    -    197
UN26181        --> AGAGCTTTCTCTCTCTACGATCAGATCAATCTCATCGACAACGTTCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- AGAGCTTTCTCTTTCTACGATCAGATCAATCTCATCGACAACGTTCCAGA
FD547108       <-- AGAGCTTTCTCTCTCTACGATCAGATCAATCTCATCGACAACGTTCCAGA
EV533113       <-- ..................................................
EV529349       --> AGAGCTTTCTCTCTCTACGATCAGATCAATCTCATCGACAACGTTCCAGA
FD551213       --> AGAGCTTTCTCTCTCTACGATCAGATCAATCTCATCGACAACGTTCCAGA
EX903772       --> AGAGCTTTCTCTCTCTACGATCAGATCAATCTCATCGACAACGTTCCAGA
FD965655       --> AGAGCTTTCTCTTTCTACGATCAGATCAATCTCATCGACAACGTTCCAGA

               197    -    247
UN26181        --> GGATCAGCTTCGGTTTCAGGAATTTGATGAGACGAGTTTCACGGTGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- GGATCAGCTTCGGTTTCAGGAATTTGATGAGACAAGTTTCACGGTGAATG
FD547108       <-- GGATCAGCTTCGGTTTCAGGAATTTGATGAGACGAGTTTCACGGTGAATG
EV533113       <-- ..........................ATGAGACGAGTTTCACGGTGAATG
EV529349       --> GGATCAGCTTCGGTTTCAGGAATTTGATGAGACGAGTTTCACGGTGAATG
FD551213       --> GGATCAGCTTCGGTTTCAGGAATTTGATGAGACGAGTTTCACGGTGAATG
EX903772       --> GGATCAGCTTCAGTTTCAGGAATTTGATGAGACGAGTTTCACGGTGAATG
FD965655       --> GGATCAGCTTCGGTTTCAGGAATTTGATGAGACAAGTTTCACGGTGAATG

               247    -    297
UN26181        --> GGGTTAAGTACGATGGGAGCTTGCTCTGTGTTGGGAACTTGCTGATGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- GGGTTAAGTACGATGGGAGCTTGCTCTGTGTTGGGAACTTGCTGATGTCA  Raphanus raphanistrum subsp. maritimus
FD547108       <-- GGGTTAAGTACGATGGCAGCTTGCTCTGTGTTGGGAACTTGCTTATGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV533113       <-- GGGTTAAGTACGATGGGAGCTTGCTCTGTGTTGGGAACTTGCTGATGTCA  Raphanus raphanistrum subsp. maritimus
EV529349       --> GGGTTAAGTACGATGGGAGCTTGCTCTGTGTTGGGAACTTGCTGATGTCA  Raphanus raphanistrum subsp. maritimus
FD551213       --> GGGTTAAGTACGATGGCAGCTTGCTCTGTGTTGGGAACTTGCTTATGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903772       --> GGGTTAAGTACGATGGCAGCTTGCTCTGTGTTGGGAACTTGCTGATGTCA  Raphanus sativus cv Rat-Tail Radish #3870
FD965655       --> GGGTTAAGTACGATGGGAGCTTGCTCTGTGTTGGGAACTTGCTGATGTCA  Raphanus raphanistrum subsp. maritimus

               297    -    347
UN26181        --> TGGAGCCCTCGTTGCTTCTCCGAGATCACAACCGACAGCTTGTCAATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- TGGAGCCCTCGTTGCTTTTCCGAGATCACAACCGACAGCTTGTCAATTTT
FD547108       <-- TGGAGCCCTCGTTGCTTCTCCGAGATCACAACCGATAGCTTGTCAATTTT
EV533113       <-- TGGAGCCCTCGTTGCTTCTCCGAGATCACAACCGACAGCTTGTCAATTTT
EV529349       --> TGGAGCCCTCGTTGCTTCTCCGAGATCACAACCGACAGCTTGTCAATTTT
FD551213       --> TGGAGCCCTCGTTGCTTCTCCGAGATCACAACCGATAGCTTGTCAATTTT
EX903772       --> TGGAGCCCTCGTAGCTTCTCCGAGATCACAACCGACAGCTTGTCAATTTT
FD965655       --> TGGAGCCCTCGTTGCTTCTCCGAGATCACAACCGACAGCTTGTCAATTTT

               347    -    397
UN26181        --> CCAGACTGTTAGACCAGTTCCAGAGCTGTTAATTGTGGGTTGTGGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- CCAGACTGTTAGACCAGTTCCAGAGCTGTTAATTGTG.............
FD547108       <-- CCAGACTGTTAGACCAGTTCCAGAGCTGTTAATTGTGGGTTGTGGAAGAT
EV533113       <-- CCAGACTGTTAGACCAGTTCCAGAGCTGTTAATTGTGGGTTGTGGAAGAT
EV529349       --> CCAGACTGTTAGACCAGTTCCAGAGCTGTTAATTGTGGGTTGTGGAAGAT
FD551213       --> CCAGACTGTTAGACCAGTTCCAGAGCTGTTAATTGTGGGTTGTGGAAGAT
EX903772       --> CCAGACTGTTAGACCAATTCCAGAGCTGTTAATTGTGGGTTGTGGAGGAT
FD965655       --> CCAGACTGTTAGACCAGTTCCAGAGCTGTTAATTGTGGGTTGTGGAAGAT

               397    -    447
UN26181        --> ACAATCATCCAGTGAATCCCCAAGTCCGTCAGTTTGTGAAGTCAATTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..................................................
FD547108       <-- ACAATCATCCAGTGAATCCCCAAGTCCGTCAGTTTGTGAAGTCAATTGGC
EV533113       <-- ACAATCATCCAGTGAATCCCCAAGTCCGTCAGTTTGTGAAGTCAATTGGC
EV529349       --> ACAATCATCCAGTGAATCCCCAAGTCCGTCAGTTTGTGAAGTCAATTGGC
FD551213       --> ACAATCATCCAGTGAATCCCCAAGTCCGTCAGTTTGTGAAGTCAATTGGC
EX903772       --> ACAATCATCCAGTGAATCCCCAAGTCCGTCAGTTTGTGAAGTCAATTGGC
FD965655       --> ACAATCATCCAGTGAATCCCCAAGTCCGTCAGTTTGTGAAGTCAATTGGC

               447    -    497
UN26181        --> ATGAAGCTAGAAACCTTGGACTCTAGAAATGCTGCATCGACTTACAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..................................................
FD547108       <-- ATGAAGCTAGAAACCTTGGACTCTAGAAATGCTGCATCGACTTACAACAT
EV533113       <-- ATGAAGCTAGAAACCTTGGACTCTAGAAATGCTGCATCGACTTACAACAT
EV529349       --> ATGAAGCTAGAAACCTTGGACTCTAGAAATGCTGCATCGACTTACAACAT
FD551213       --> ATGAAGCTAGAAACCTTGGACTCTAGAAATGCTGCATCGACTTACAACAT
EX903772       --> ATGAAGCTAGAAACCTTGGACTCTAGAAATGCTGCATCGACTTACAACAT
FD965655       --> ATGAAGCTAGAAACCTTGGACTCTAGAAATGCTGCATCGACTTACAACAT

               497    -    547
UN26181        --> ACTGAATGAGGAAGGCAGGATAGTGGCGGCTGCGTTGCTTCCATATGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..................................................
FD547108       <-- ACTGAATGAGGAAGGCAGGATAGTGGCGGCTGCGTTGCTTCCATATGGAG
EV533113       <-- ACTGAATGAGGAAGGCAGGATAGTGGCGGCTGCGTTGCTTCCATATGGAG
EV529349       --> ACTGAATGAGGAAGGCAGGATAGTGGCGGCTGCGTTGCTTCCATATGGAG
FD551213       --> ACTGAATGAGGAAGGCAGGATAGTGGCGGCTGCGTTGCTTCCATATGGAG
EX903772       --> ACTGAATGAGGAAGGCAGGATAGTGGCGGTTGCGTTGCTTCCTTATGGAG
FD965655       --> ACTGAATGAGGAAGGCAGGATAGTGGCGGCTGCGTTGCTTCCATATGGAG

               547    -    597
UN26181        --> TTATACATCCTAACTCTTAACCTCGGCAGAACCAAACTTTGAACAACTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..................................................
FD547108       <-- TTATGCATCCTAACTTTTAACCTCGGCAGAACCAAACTTTGAACAACTCG
EV533113       <-- TTATACATCCTAACTCTTAACCTCGGCAGAACCAAACTTTGAACAACTCG
EV529349       --> TTATACATCCTAACTCTTAACCTCGGCAGAACCAAACTTTGAACAACTCG
FD551213       --> TTATGCATCCTAACTCTTAACCTCGGCAGAACCAAACTTTGAACAACTCG
EX903772       --> TTATACATCCTAACTCTTAACCTCGGCAGAACCAAACTTTGAACAACTCG
FD965655       --> TTATACATCCTAACTCTTAACCTCGGCAGAACCAAACTTTGAACAACTCG

               597    -    647
UN26181        --> AGATTATCTTTTTTTTTTT-GTTAAAAACACCAGCACGGTCTGTAAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..................................................
FD547108       <-- AGATTATCTTTTTTTTTTTTGTTAAAAACACCAGCACGGTCTGTAAATGA
EV533113       <-- AGATTATCTTTTTTTTTTT-GTTAAAAACACCAGCACGGTCTGTAAATGA
EV529349       --> AGATTATCTTTTTTTTTTT-GTTAAAAACACCAGCACGGTCTGTAAATGA
FD551213       --> AGATTATCTTTTTTTTTTTTGTTAAAAACACCAGCACGGTCTGTAAATGA
EX903772       --> AGATTATCTTCTTTTTTTT-GTTAAAAACACCAGCACGGTCTGTAAATGA
FD965655       --> AGATTATCTTTTTTTTTTT-GTTAAAAA......................

               647    -    697
UN26181        --> AATCTTTCACACTTAATTGTTTTTTCGAAACTTTTCTTGTCTTGTTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..................................................
FD547108       <-- AATCTTTCACACTTAATTGTTTTTTCGAAACTTTTCTTGTCTTGTCGTAG
EV533113       <-- AATCTTTCACACTTAATTGTTTTTTCGAAACTTTTCTTGTCTTGTTGTAG
EV529349       --> AATCTTTCACACTTAATTGTTTTTTCGAAACTTTTCTTGTCTTGTTGTAG
FD551213       --> AATCTTTCACACTTAATTGTTTTTTCGAAACTTTTCTTGTCTTGTCGTAG
EX903772       --> AATCTTTCACACTTAATTGTTTTTTCGAAACTTTTCTTGTCTTGTTGTAG
FD965655       --> ..................................................

               697    -    747
UN26181        --> CTTGAATAAAATTGAGCTTTCTCTGGAAACAAACAGCAGTTTCCTGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..................................................
FD547108       <-- CTTGAATAAAATTGAGCTTTCTCTGGAAACAAACAGCAGTTTCCTGCTTT
EV533113       <-- CTTGAATAAAATTGAGCTTTCTCTGGAAACAAACAGCAGTTTCCTGCTTT
EV529349       --> CTTGAATAAAATTGAGCTTTCTCTGGAA-CAAACAGCAGTTTCCTGCTTT
FD551213       --> CTTGAATAAAATTGAGCTTTCTCTGGAAcaacagca..............
EX903772       --> CTTGAATAAAATTGAGCTTTCTCTGG........................
FD965655       --> ..................................................

               747    -    797
UN26181        --> ATAACTTAAGTACCTGGAAGAAAGACATCTCAGGGTTGACAATCTTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..................................................
FD547108       <-- ATAACTTAAGTACCTGGAAGAAAGACATCTCAGGGTTGACAATCTTGATT
EV533113       <-- ATAACTTAAGTACCTGGAAGAAAGACATCTCAGGGTTGACAATCT-GATT
EV529349       --> ATAACTTAAGTACCTGGAAGAAAGACATC.....................
FD551213       --> ..................................................
EX903772       --> ..................................................
FD965655       --> ..................................................

               797    -    847
UN26181        --> AAATCTGTTTTATATAATATCTTCAGAATCCTGGAGATTATGG...
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961338       <-- ..............................................
FD547108       <-- AAATCTGTTTTATATAATATCTTCAGAATCCTGGAGATTATGGtcg
EV533113       <-- AAATCTGTTTTATATAATATCTTCAGAATCCTGGAGATTATGGcc.
EV529349       --> ..............................................
FD551213       --> ..............................................
EX903772       --> ..............................................
FD965655       --> ..............................................