1      -     51
UN26268        --> GGAGGTAATAAATATTTTAGAGTTACTCTATTATTCATGAAAATTTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- .........ttttgTTTTAGAGTTACTCTATTATTCATGAAAATTTATAT
EV536881       <-- ..................AGAGTTACTCTATTATTCATGAAAATTTATAT
EX764341       <-- ..................AGAGTTACTCTATTATTCATGAAAATTTATAT
FD965373       <-- ...................GAGTTACTCTATTATTCATGAAAATTTATAT
EX771043       <-- ...................................CATGAAAATTTATAT
EX771067       <-- ...................................CATGAAAATTTATAT
EV538746       <-- ..................................................
EY938950       <-- ..................................................
EX755024       <-- ..................................................
FD949357       <-- ..................................................
EX755527       <-- ..................................................
EV544390       --> GGAGGTAATAAATATTTTAGAGTTACTCTATTATTCATGAAAATTTATAT
EV541231       --> ..................AGAGTTACTCTATTATTCATGAAAATTTATAT
EX768276       --> ..................AGAGTTACTCTATTATTCATGAAAATTTATAT
EX775157       --> ...................................CATGAAAATTTATAT
EX775177       --> ...................................CATGAAAATTTATAT
EV542687       --> ..................................................
EY934976       --> ..................................................
FD945015       --> ..................................................

               51     -    101
UN26268        --> GTCTTCGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- GTCTTCGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EV536881       <-- GTCTTAGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EX764341       <-- GTCTTCGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
FD965373       <-- GTCTTCGGATGTACACATGAAAATAGTTTTTTTGGGTGTTTACTTAAAAT
EX771043       <-- GTCT-CGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EX771067       <-- GTCTTCGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EV538746       <-- ............ACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EY938950       <-- .................................GGGTGTTTACTTAAAAT
EX755024       <-- ..................................................
FD949357       <-- ..................................................
EX755527       <-- ..................................................
EV544390       --> GTCTTCGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EV541231       --> GTCTTAGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EX768276       --> GTCTTCGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EX775157       --> GTCTTCGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EX775177       --> GTCTTCGGATGTACACATGAAAATAGTTTTTT-GGGTGTTTACTTAAAAT
EV542687       --> ............ACACATGAAAATAGTTTTTT-GGGGGTTTACTTAAAAT
EY934976       --> .................................GGGTGTTTACTTAAAAT
FD945015       --> .................................GGGTGTTTACTTAAAAT

               101    -    151
UN26268        --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- TACAAGAAACCAGAAGATCATTCATGATTCATGGAAAAGGAGAGAGAGAG
EV536881       <-- TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EX764341       <-- TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAG--
FD965373       <-- TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EX771043       <-- TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EX771067       <-- TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EV538746       <-- TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EY938950       <-- TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EX755024       <-- ...tttAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
FD949357       <-- ..........CAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EX755527       <-- ..................................................
EV544390       --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EV541231       --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EX768276       --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGA-
EX775157       --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EX775177       --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EV542687       --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
EY934976       --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG
FD945015       --> TACAAGAAACCAGAAGATCGTTCATGATTCATGGAAAAGGAGAGAGAGAG

               151    -    201
UN26268        --> ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EV536881       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EX764341       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
FD965373       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EX771043       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EX771067       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EV538746       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EY938950       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EX755024       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
FD949357       <-- ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EX755527       <-- .........GATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EV544390       --> ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EV541231       --> ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EX768276       --> -TGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EX775157       --> ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EX775177       --> ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EV542687       --> ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
EY934976       --> ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC
FD945015       --> ATGAACACTGATGAAGGACATATCTAGAGTTCATGTTCAGAGTGAAAGAC

               201    -    251
UN26268        --> CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- CAGACTCTTCATCCTCGTCGAGGGATGAAGTGTAGGTGAAGTAGAAAGTC
EV536881       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EX764341       <-- C--ACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
FD965373       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EX771043       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EX771067       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EV538746       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EY938950       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EX755024       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
FD949357       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTGGGTGAAGTAGAAAGTC
EX755527       <-- CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EV544390       --> CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EV541231       --> CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EX768276       --> CA--CTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAAAAAGTC
EX775157       --> CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EX775177       --> CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EV542687       --> CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAGAAAGTC
EY934976       --> CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTAGGTGAAGTAAAAAGTC
FD945015       --> CAGACTCTTCATCCTCGTCGAGAGATGAAGTGTGGGTGAAGTAGAAAGTC

               251    -    301
UN26268        --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EV536881       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EX764341       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
FD965373       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EX771043       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EX771067       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EV538746       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EY938950       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EX755024       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
FD949357       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EX755527       <-- CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EV544390       --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EV541231       --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EX768276       --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EX775157       --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EX775177       --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EV542687       --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
EY934976       --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT
FD945015       --> CAGATCAAACCAAACACTCCTAAAAGAATCCAACCCAAGAGGTTGTTGCT

               301    -    351
UN26268        --> CAGCCCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- CAGCCCAAAGGGCAAGCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV536881       <-- CAGCCCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764341       <-- CAGCCCAAAGGGCAAGCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965373       <-- CAGCCCAAAGGGCAAGCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. maritimus
EX771043       <-- CAGACCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. landra
EX771067       <-- CAGACCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. landra
EV538746       <-- CAGCCCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938950       <-- CAGCCCAAAGGGCAAGCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus sativus cv Early Scarlet Globe
EX755024       <-- CAGCCCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949357       <-- CAGACCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus sativus cv Early Scarlet Globe
EX755527       <-- Cc................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544390       --> CAGCCCAAAGGGCAAGCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541231       --> CAGCCCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX768276       --> CAGCCCAAAGGGCAAGCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775157       --> CAGACCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. landra
EX775177       --> CAGACCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. landra
EV542687       --> CAGCCCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934976       --> CAGCCCAAAGGGCAAGCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus sativus cv Early Scarlet Globe
FD945015       --> CAGACCAAAGGGCAATCCGGTTCCCTCCGTTGACATCCTGTCATCCACCA  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN26268        --> AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV536881       <-- AAGCCATAGCCGGGCTGCTCATCACAGCCGTCAAAGCTGCTGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764341       <-- AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGTTGCCGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965373       <-- AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus raphanistrum subsp. maritimus
EX771043       <-- AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus raphanistrum subsp. landra
EX771067       <-- AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus raphanistrum subsp. landra
EV538746       <-- AAGCCATAGCCGGGCTGCTCATCACAGCCGTCAAAGCTGCTGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938950       <-- AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus sativus cv Early Scarlet Globe
EX755024       <-- AAGCCATAGCCGGGCTGCTCATCACAGCCGTCAAAGCTGCTGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949357       <-- AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus sativus cv Early Scarlet Globe
EX755527       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544390       --> AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541231       --> AAGCCATAGCCGGGCTGCTCATCACAGCCGTCAAAGCTGCTGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX768276       --> AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGTTGCCGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775157       --> AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus raphanistrum subsp. landra
EX775177       --> AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus raphanistrum subsp. landra
EV542687       --> AAGCCATAGCCGGGCTGCTCATCACAGCCGTCAAAGCTGCTGTAGCCGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934976       --> AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus sativus cv Early Scarlet Globe
FD945015       --> AAGCCATAGCCGGGCTGCTCATCACAGCTGTCAAAGCTGCCGTAGCCGCC  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN26268        --> GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EV536881       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EX764341       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
FD965373       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EX771043       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EX771067       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EV538746       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EY938950       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EX755024       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
FD949357       <-- GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EX755527       <-- ..................................................
EV544390       --> GCAAAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EV541231       --> GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EX768276       --> GCAAAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EX775157       --> GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EX775177       --> GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EV542687       --> GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
EY934976       --> GCAAAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT
FD945015       --> GCAGAAACTCCAGCTCCCACGGCTGACACGTTTCCTTGCTTGGTCTCCAT

               451    -    501
UN26268        --> CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV536881       <-- CGAGCATCTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764341       <-- CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965373       <-- CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. maritimus
EX771043       <-- CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. landra
EX771067       <-- CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. landra
EV538746       <-- CGAGCATCTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938950       <-- CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAG  Raphanus sativus cv Early Scarlet Globe
EX755024       <-- CGAGCATCTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949357       <-- CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus sativus cv Early Scarlet Globe
EX755527       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544390       --> CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541231       --> CGAGCATCTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX768276       --> CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775157       --> CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. landra
EX775177       --> CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. landra
EV542687       --> CGAGCATCTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934976       --> CGAGCACTTCACTCCTCCCTTCCTCTTACTCATTGGAGGCAAACCAAGAG  Raphanus sativus cv Early Scarlet Globe
FD945015       --> CG................................................  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN26268        --> CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV536881       <-- CGGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764341       <-- CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965373       <-- CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. maritimus
EX771043       <-- CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. landra
EX771067       <-- CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. landra
EV538746       <-- CGGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938950       <-- CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus sativus cv Early Scarlet Globe
EX755024       <-- CGGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949357       <-- CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus sativus cv Early Scarlet Globe
EX755527       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544390       --> CAGGAGCAGAAACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541231       --> CGGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX768276       --> CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775157       --> CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. landra
EX775177       --> CAGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. landra
EV542687       --> CGGGAGCAGAGACGGCGACGGTGGGCTTGAGAAGGAGAGCAGGACGAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934976       --> CAGGAGCAAAAACGGCGACGGTGGGCTTGAAAAGGAAAGCAGGACGAGCG  Raphanus sativus cv Early Scarlet Globe
FD945015       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN26268        --> ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV536881       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTCTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764341       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965373       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAACTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. maritimus
EX771043       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. landra
EX771067       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. landra
EV538746       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTCTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938950       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus sativus cv Early Scarlet Globe
EX755024       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTCTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949357       <-- ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus sativus cv Early Scarlet Globe
EX755527       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544390       --> ACGGGGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541231       --> ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTCTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX768276       --> ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775157       --> ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. landra
EX775177       --> ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus raphanistrum subsp. landra
EV542687       --> ACGGAGACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTCTCTCTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934976       --> ACGGAAACGGTGGAAGCGGAGGCAGTGAAGCTAGCCATTTTTCTCTATCT  Raphanus sativus cv Early Scarlet Globe
FD945015       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN26268        --> CTCTTTTTTTGCTTACACAACTAGACAACCTTTAATTTTTTTGCTTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548182       <-- CTCTTTTTTTGTTTACACAACTAGACAACCTTTAATTTTTTTGCTTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV536881       <-- CTCTTTTTT-GCTTACACAACTAGACAACCTTTccc..............  Raphanus raphanistrum subsp. raphanistrum (MS)
EX764341       <-- CTCTTTTTTTGTTTACACAACTAGACAACCTTTAATTTTTTTGCTTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965373       <-- CTCTTTTTTTGTTTACACAACTAGACAACCc...................  Raphanus raphanistrum subsp. maritimus
EX771043       <-- CTCTTTTTTTGCTTACACAACTAGACAACCTTTcc...............  Raphanus raphanistrum subsp. landra
EX771067       <-- CTCTTTTTTTGCTTACACAACTAGACAACCTTTcc...............  Raphanus raphanistrum subsp. landra
EV538746       <-- CTCTTTTTT-GCTTACACAACTAGACAACCTTTcc...............  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938950       <-- CTCTTTTTTTGTTTACACAACTAGACAACCTTTAATTTTTTTGCTTGTcc  Raphanus sativus cv Early Scarlet Globe
EX755024       <-- CTCTTTTTT-GCTTACACAACTAGACAACCTTTcc...............  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949357       <-- CTCTTTTTTTGTTTACACAACTAGACAACCTTTAATTTTTTTGCTTccc.  Raphanus sativus cv Early Scarlet Globe
EX755527       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544390       --> CTCTTTTTTTGTTTACACAACTAGACAACCTTTAATTTTTTTGCTTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541231       --> CTCTTTTTT-GCTTACACAACTAGACAACCTTTccc..............  Raphanus raphanistrum subsp. raphanistrum (MS)
EX768276       --> CTCTTTTTTTGTTTACACAACTAGACAACCTTTAATTTTTTTGCTTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775157       --> CTCTTTTTTTGCTTACACAACTAGACAACCTTTcc...............  Raphanus raphanistrum subsp. landra
EX775177       --> CTCTTTTTTTGCTTACACAACTAGACAACCTTTcc...............  Raphanus raphanistrum subsp. landra
EV542687       --> CTCTTTTTT-GCTTACACAACTAGACAACCTTTcc...............  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934976       --> CTCTTTTTTTGTTTACACAACTAGACAACCTTTAATTTTTTTGCTTGTcc  Raphanus sativus cv Early Scarlet Globe
FD945015       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN26268        --> TCC
                   ~~~
FD548182       <-- TCC
EV536881       <-- ...
EX764341       <-- TCC
FD965373       <-- ...
EX771043       <-- ...
EX771067       <-- ...
EV538746       <-- ...
EY938950       <-- ...
EX755024       <-- ...
FD949357       <-- ...
EX755527       <-- ...
EV544390       --> TC.
EV541231       --> ...
EX768276       --> TCC
EX775157       --> ...
EX775177       --> ...
EV542687       --> ...
EY934976       --> ...
FD945015       --> ...