1      -     51
UN26425        --> GTTTCTTCTTTTATTTTAAAATTTTGCTATGATTATTTCGTTTCTCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- ..................................................
EV565707       <-- ..................................................
EY895673       --> GTTTCTTCTTTTATTTTAAAATTTTGCTATGATTATTTCGTTTCTCAAAC
EV570989       --> ....CTTCTTTTATTTTAAAAATTTGCTATGATTATTTCGTTTCTCAACC
EV570990       --> ....CTTCTTTTATTTTAAAAATTTGCTATGATTATTTCGTTTCTCAACC
EV541819       --> ............ATTTTAAAATTTTGCTGTGATTATTTTGTTTCTCAACC
EY902107       --> ......................................CGTTTCTCAACC

               51     -    101
UN26425        --> TCTCCTCACATATAATAATAATGATAATTTATTTGAAGAAGAAACAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- ..................................................
EV565707       <-- ..................................................
EY895673       --> TCTCCTCACATATAATAATAATGATAATTTATTTGAAGAAGAAACAGAGA
EV570989       --> TCTCCTCACATATAATAATAATGATAATTTATTTGAAGAAGAAACAGAGA
EV570990       --> TCTCCTCACATATAATAATAATGATAATTTATTTGAAGAAGAAACAGAGA
EV541819       --> ACTCCTCCCATATAATAATAATGATAATTTATTTGAAGAAGAAACAGAGA
EY902107       --> ACTCCTCCCATATAATAATAATGATAATTTATTTGAAGAAGAAACAGAGA

               101    -    151
UN26425        --> GATTTAGGAAAGATGTGTATGGGAAGAAGAAGAATCACGAGTCTTAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- ..................................................
EV565707       <-- ..................................................
EY895673       --> GATTTAGGAAAGATGTGTATGGGAAGAAGAAGAATCACGAGTCTTAGAGC
EV570989       --> GATTTAGGAAAGATGTGTATGGGAAGAAGAAGAATCACGAGTCTTAGAGC
EV570990       --> GATTTAGGAAAGATGTGTATGGGAAGAAGAAGAATCACGAGTCTTAGAGC
EV541819       --> GATTTAGGAAAGATGTGTATGGGAAGAAGAAGAATGACGAGTCTTAGAGC
EY902107       --> GATTTAGGAAAGATGTGTATGGGAAGAAGAAGAATGACGAGTCTTAGAGC

               151    -    201
UN26425        --> TGAAACAACAAGCTGATACTTCTAAAACCCCATTGGGTGTTTGTGAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- ..................................................
EV565707       <-- ..................................................
EY895673       --> TGAAACAACAAGCTGATACTTCTAAAACCCCATTGGGTGTTTGTGAACAT
EV570989       --> TGAAACAACAAGCTGATACTTCTAAAACCCCATTGGGTGTTTGTGAACAT
EV570990       --> TGAAACAACAAGCTGATACTTCTAAAACCCCATTGGGTGTTTGTGAACAT
EV541819       --> TGAAACAACAAGCTGATACTTCTAAAACCCCATTGGGTGTTTGTGAACAT
EY902107       --> TGAAACAACAAGCTGATACTTCTAAAACCCCATTGGGTGTTTGTGAACAT

               201    -    251
UN26425        --> AAGCCTGACCCATCACTCTCTATCATTTCCCCAATCTTCTTCACTCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- ..................................................
EV565707       <-- ..................................................
EY895673       --> AAGCCTGACCCATCACTCTCTATCATTTCCCCAATCTTCTTCACTCTCTC
EV570989       --> AAGCCTGACCCATCACTCTCTATCATTTCCCCAATCTTCTTCACTCTCTC
EV570990       --> AAGCCTGACCCATCACTCTCTATCATTTCCCCAATCTTCTTCACTCTCTC
EV541819       --> AAGCCTGACCCATCACTCTCTATCATTTCCCCAATCTTCTTCACTCTCTC
EY902107       --> AAGCCTGACCCATCACTCTCTATCATTTCCCCAATCTTCTTCACTCTCTC

               251    -    301
UN26425        --> CTTTTGAAGTAGTGAGAAAAGAGGAGAGAGGGAAGAGTTGTCAAAGTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- ..............................................TGTA
EV565707       <-- ..................................................
EY895673       --> CTTTTGAAGTAGTGAGAAAAGAGGAGAGAGGGAAGAGTTGTCAAAGTGTA
EV570989       --> CTTTTGAAGTAGTGAGAAAAGAGGAGAGAGGGAAGAGTTGTCAAAGTGTA
EV570990       --> CTTTTGAAGTAGTGAGAAAAGAGGAGAGAGGGAAGAGTTGTCAAAGTGTA
EV541819       --> CTTTTGAAGTAGTGAGAAAAGAGGAGAGAGGGAAGAGTTGTCAAAGTGTA
EY902107       --> CTTTTGAAGTAGTGAGAAAAGAGGAGAGAGGGAAGAGTTGTCAAAGTGTA

               301    -    351
UN26425        --> CTGTGTACAGTTCTCCAGAAACAGAAAGTGCAACTGCAGCAGCAACTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- CTGTGTACAGTTCTCCAGAAACAGAAAGTGCAACTGCAGCAGCAACTTCA
EV565707       <-- ..................................................
EY895673       --> CTGTGTACAGTTCTCCAGAAACAGAAAGTGCAACTGCAGCAGCAACTTCA
EV570989       --> CTGTGTACAGTTCTCCAGAAACAGAAAGTGCAACTGCAGCAGCAACTTCA
EV570990       --> CTGTGTACAGTTCTCCAGAAACAGAAAGTGCAACTGCAGCAGCAACTTCA
EV541819       --> CTGTGTACAGTTCTCCAGAAACAGAAAGTGCAACTGCAGCAGCAACTTCA
EY902107       --> CTGTGTACAGTTCTCCAGAAACAGAAAGTGCAACTGCAGCAGCAACTTCA

               351    -    401
UN26425        --> GAAGGTCTAAACTCCAAAAAGTCAATACCTTTGGTTTTGCTGGCTATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- GAAGGTCTAAACTCCAAAAAGTCAATACCTTTGGTTCTGCTGGCTATCAC  Raphanus raphanistrum subsp. landra
EV565707       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY895673       --> GAAGGTCTAAACTCCAAGAAGTCAATACCTTTGGTTTTGCTGGCTATCAC  Raphanus raphanistrum subsp. maritimus
EV570989       --> GAAGGTCTAAACTCCAAAAAGTCAATACCTTTGGTTCTGCTGGCTATCAC  Raphanus raphanistrum subsp. landra
EV570990       --> GAAGGTCTAAACTCCAAAAAGTCAATACCTTTGGTTCTGCTGGCTATCAC  Raphanus raphanistrum subsp. landra
EV541819       --> GAAGGTCTAAACTCCAAAAAGTCAATACCTTTGGTTTTGCTGGCTATCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902107       --> GAAGGTCTAAACTCCAAAAAGTCAATACCTTTGGTTTTGCTGGCTATCAC  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN26425        --> TTGTAATGATCTGGATATCAATGTGCTGGATGGTTCTTGATCACATTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- TTGTAATGATCTGGATATCAATGTGCTGGATGGTTCTTGATCACATTTAC
EV565707       <-- ..................................................
EY895673       --> TTGTAATGATCTGGATATCAATGTGCTGGATGGTTCTTGATCACATTTAC
EV570989       --> TTGTAATGATCTGGATATCAATGTGCTGGATGGTTCTTGATCACATTTAC
EV570990       --> TTGTAATGATCTGGATATCAATGTGCTGGATGGTTCTTGATCACATTTAC
EV541819       --> TTGTAATGATCTGGATATCAATGTGCTGGATGGTTCTTGATCACATTTAC
EY902107       --> TTGTAATGATCTGGATATCAATGTGCTGGATGGTTCTTGATCACATTTAC

               451    -    501
UN26425        --> TCATCTTCCTCAGGAAATATCTTATGTATGAGCAGGGAGTTATCGCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- TCATCTTCCTCAGGAAATATCTTA-GTATGAGCAGGGAGTTATCGCTCTC  Raphanus raphanistrum subsp. landra
EV565707       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY895673       --> TCATCTTCCTCAGAAAATATCTTATGTATGAGCAGGGAGTTATCGCTCTC  Raphanus raphanistrum subsp. maritimus
EV570989       --> TCATCTTCCTCAGGAAATATCTTA-GTATGAGCAGGGAGTTATCGCTCTC  Raphanus raphanistrum subsp. landra
EV570990       --> TCATCTTCCTCAGGAAATATCTTA-GTATGAGCAGGGAGTTATCGCTCTC  Raphanus raphanistrum subsp. landra
EV541819       --> TCATCTTCCTCAGGAAATATCTTATGTATGAGCAGGGAGTTATCGCTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902107       --> TCATCTTCCTCAGGAAATATCTTATGTATGAGCAGGGAGTTATCGCTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN26425        --> AATCTCCATTCCAGTCTGTTCAACACCAAAAGCTCCATTCTTTGAACTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- AATCTCCATTCCAGTCTGTTCAACACCAAAAGCTCCATTCTTTGAACTGA  Raphanus raphanistrum subsp. landra
EV565707       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY895673       --> AATCTCCATTCCAATCTGTTCAACACCAAAAGCTCCATTCTTTGAACTGA  Raphanus raphanistrum subsp. maritimus
EV570989       --> AATCTCCATTCCAGTCTGTTCAACACCAAAAGCTCCATTCTTTGAACTGA  Raphanus raphanistrum subsp. landra
EV570990       --> AATCTCCATTCCAGTCTGTTCAACACCAAAAGCTCCATTCTTTGAACTGA  Raphanus raphanistrum subsp. landra
EV541819       --> AATCTCCATTCCAATCTGTTCAACACCAAAAGCTCCATTCTTTGAACTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902107       --> AATCTCCATTCCAATCTGTTCAACACCAAAAGCTCCATTCTTTGAACTGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN26425        --> TTTGGCCTCAAACACAAACTGAGGATGTCCAGCCTGAAGATCTATTAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- TTTGGCCTCAAACACAAACTGAGGATGTCCAGCCTGAAGATCTATTAGCA  Raphanus raphanistrum subsp. landra
EV565707       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY895673       --> TTTAGCCTCAAACACAAACTGAGGATGTCCAGCCTGAAGATCTATTAGCA  Raphanus raphanistrum subsp. maritimus
EV570989       --> TTTGGCCTCAAACACAAACTGAGGATGTCCAGCCTGAAGATCTATTAGCA  Raphanus raphanistrum subsp. landra
EV570990       --> TTTGGCCTCAAACACAAACTGAGGATGTCCAGCCTGAAGATCTATTAGCA  Raphanus raphanistrum subsp. landra
EV541819       --> TTTAGCCTCAAACACAAACTGAGGATGTCCAGCCTGAAGATCTATTAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902107       --> TTTAGCCTCAAACACAAACTGAGGATGTCCAGCCTGAAGATCTATTAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN26425        --> ATGGGACTTCAGTTTCTTCAATTTTGGCTGCCAA-TGATAAACAA-GCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- ATGGGACTTCAGTTTCTTCAATTTTGGCTGCCAA-TGATAAACAA-GCCA  Raphanus raphanistrum subsp. landra
EV565707       <-- .TGGGACTTCAGTTTCTTCAATTTTGGCTGCCAAATGATAAACAAAGCCA  Raphanus raphanistrum subsp. landra
EY895673       --> ATGGGACTTCAGTTTCTTCAATTTTGGCTGCCAA-GGATAA-CAA-GCCA  Raphanus raphanistrum subsp. maritimus
EV570989       --> ATGGGACTTCAGTTTCTTCAATTTTGGCTGCCAA-TGATAAACAA-GCCA  Raphanus raphanistrum subsp. landra
EV570990       --> ATGGGACTTCAGTT....................................  Raphanus raphanistrum subsp. landra
EV541819       --> ATGGGACTTCAGTTTCTTCAATTTTGGCTGCCAA-GGATAAACAA-GCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902107       --> ATGGGACTTCAGTTTCTTCAATTTTGGCTGCCAA-GGATAAACAA-GCCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN26425        --> CAGCCAACAACTGCACTGCCCAAGCGTTGCCACTAGGGACATCATGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- CAGCCAACAACTGCACTGCCCAAGCGTTGCCACTAGGGACATCATGAACT
EV565707       <-- CAGCCAACAACTGCACTGCCCAAGCGTTGCCACTAGGGACATCATGAACT
EY895673       --> CAGCCAACAACTGCACTGCCCAAGCGTTGCCACCAGGGACATCATGAACT
EV570989       --> CAGCCAACAACTGCACTGCCCAAGCGTTGCCACTAGGGACATCATGAACT
EV570990       --> ..................................................
EV541819       --> CAGCCAACAACTGTACTGCCCAAGCGTTGCCACTAGGGACATCATGAACT
EY902107       --> CAGCCAACAACTGTACTGCCCAAGCGTTGCCACTAGGGACATCATGAACT

               701    -    751
UN26425        --> GATAAGAACCGATCCAAGTAGTTCATAGATAAGCAAATACACATTGGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- GATAAGAACCGATCCAAGTAATTCATAGATAAGCAAATACACATTGGGCC  Raphanus raphanistrum subsp. landra
EV565707       <-- GATAAGAACCGATCCAAGTAATTCATAGATAAGCAAATACACATTGGGCC  Raphanus raphanistrum subsp. landra
EY895673       --> GATAAGAACCGATCCAAGTAGCTCATAGATAAGCAAATACACATTGGTCC  Raphanus raphanistrum subsp. maritimus
EV570989       --> GATAAGAACCGATCCAAGTAATTCATAGATAAGCAAATACACATTGGGCC  Raphanus raphanistrum subsp. landra
EV570990       --> ..................................................  Raphanus raphanistrum subsp. landra
EV541819       --> GATAAGAACCGATCCAAGTAGTTCATAGATAAGCAAATACACATTGGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902107       --> GATAAGAACCGATCCAAGTAGTTCATAGATAAGCAAATACACATTGGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)

               751    -    801
UN26425        --> AAACTGGTGTTCCTCACAAGCCTTTAAAATCCAATTAAGAGCTTCTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- AAACTGGTGTTCCTCACAAGCCTTTAAAATCCAATTAAGAGCTTCTCTTC
EV565707       <-- AAACTGGTGTTCCTCACAAGCCTTTAAAATCCAATTAAGAGCTTCTCTTC
EY895673       --> AAACTGG...........................................
EV570989       --> AAACTGGTGTTCCTCACAAGCCTTTAAAATCCAATTAAGAGCTTCTCTTC
EV570990       --> ..................................................
EV541819       --> AAACTGGTGTTCCTCACAAGCCTTCAAAATCCAATTAAGAGCTTCTCTTC
EY902107       --> AAACTGGTGTTCCTCACAAGCCT...........................

               801    -    851
UN26425        --> TTCTGACATTCAAATCAAAATCTCCACTTCTGAGTCTGCTGATGTAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- TTCTGACATTCAAATCAAAATCTCCACTTCTGAGTCTGCTGATGTAATCA
EV565707       <-- TTCTGACATTCAAATCAAAATCTCCACTTCTGAGTCTGCTGATGTAATCA
EY895673       --> ..................................................
EV570989       --> TTCTGACATTCAAATCAAAATCTCCACTTCTGAGTCTGCTGATGTAATCA
EV570990       --> ..................................................
EV541819       --> TTCTGACATTCAAATCAAAATCTCCACTTCTGAGTCTGGTGATGTAATCA
EY902107       --> ..................................................

               851    -    901
UN26425        --> TCACTTGGCAAAAGCTGCTTCTCCTTCTCCTTCTCCATCAAAGTTGGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- TCACTTGGCAAAAGCTGCTTCTCCTTCTCCTTCTCCATCAAAGTTGGTGA
EV565707       <-- TCACTTGGCAAAAGCTGCTTCTCCTTCTCCTTCTCCATCAAAGTTGGTGG
EY895673       --> ..................................................
EV570989       --> TCACTTGGCAAAAGCTGCTTCTCCTTCTCCTTCTCCATCAAAGTTGGTGA
EV570990       --> ..................................................
EV541819       --> TCACTGGGCAAAAGCTG.................................
EY902107       --> ..................................................

               901    -    951
UN26425        --> TCTCTGTACATAAAAGACTCAGTTCTAGATTGTCTGCCATTATAACAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- TCTCTGTACATAAAAGACTCAGTTCTAGATTGTCTGCCATTATAACAGAG
EV565707       <-- TCTCTGTACATAAAAGACTCAGTTCTAGATTGTCTGCCATTATAACAGAG
EY895673       --> ..................................................
EV570989       --> TCTCTGTACATAAAAGACTCAGTTCTAGATTGTCTG..............
EV570990       --> ..................................................
EV541819       --> ..................................................
EY902107       --> ..................................................

               951    -   1001
UN26425        --> TGTTTCAAAAAAAAAAGTTTTTTAAAAATTGTTCTTCTTTCCGATCTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- TGTTTCAAAAAAAAAAGTTTTTTAAAAATTGTTCTTCTTTCCGATCTAAA
EV565707       <-- TGTTTCAAAAAAAAAAGTTTTTTAAAAATTGTTCTTCTTTCCGATCTAAA
EY895673       --> ..................................................
EV570989       --> ..................................................
EV570990       --> ..................................................
EV541819       --> ..................................................
EY902107       --> ..................................................

               1001   -   1051
UN26425        --> TTGTTAAGACAAGGATTGTCATCTGGAGATTGGGTTTTTGATTTTTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- TTGTTAAGACAAGGATTGTCATCTGGAGATTGGGTTTTTGATTTTTCTTA
EV565707       <-- TTGTTAAGACAAGGATTGTCATCTGGAGATTGGGTTTTTGATTTTTCTTA
EY895673       --> ..................................................
EV570989       --> ..................................................
EV570990       --> ..................................................
EV541819       --> ..................................................
EY902107       --> ..................................................

               1051   -   1101
UN26425        --> ATGTCTTCGTGTAAGGATTTTTTTTTTTGTTTTGTTTTTTTTCTTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565708       <-- ATGTCTTCGTGTAAGGATTTTTTTTTTTGTTTTGTTTTTTTTCTTTTTGC
EV565707       <-- ATGTCTTCGTGTAAGGATTTTTTTTTTTGTTTTGTTTTTTTTCTTTTTGC
EY895673       --> ..................................................
EV570989       --> ..................................................
EV570990       --> ..................................................
EV541819       --> ..................................................
EY902107       --> ..................................................

               1101   -   1151
UN26425        --> TTTGGTTCC
                   ~~~~~~~~~
EV565708       <-- TTTGGTTCC
EV565707       <-- TTTGGTTCC
EY895673       --> .........
EV570989       --> .........
EV570990       --> .........
EV541819       --> .........
EY902107       --> .........