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Alignment for radish unigene UN39091

               1      -     51
UN39091        --> GGACGAATCCAATTAATCATTCAAATCGAAGAAACAGAGAAGAGAAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- GGACGAATCCAATTAATCATTCAAATCGAAGAAACAGAGAAGAGAAGTTG
FD984345       <-- .........................ggGAAGAAACAGAGAAGAGAAGTTG
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> GGACGAATCCAATTAATCATTCAAATCGAAGAAACAGAGAAGAGAAGTTG
EY923819       --> ................ggATTCAAATCGAAGAAACAGAGAAGAGAAGTTG
FD962912       --> .................gATTCAAATCGAAGAAACAGAGAAGAGAAGTTG
FD536436       --> ....................ggAAATCGAAGAAACAGAGAAGAGAAGTTG
EY898073       --> ....................ggagATCGAAGAAACAGAGAAGAGAAGTTG
FD988466       --> .........................ggGAAGAAACAGAGAAGAGAAGTTG
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               51     -    101
UN39091        --> AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
FD984345       <-- AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
EY923819       --> AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
FD962912       --> AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
FD536436       --> AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
EY898073       --> AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
FD988466       --> AATCAAAATGGCTGGGAGAGCTTCGATCCCTGCTCGCAACTCTGCCCTCA
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               101    -    151
UN39091        --> TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
FD984345       <-- TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
EY923819       --> TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
FD962912       --> TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
FD536436       --> TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
EY898073       --> TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
FD988466       --> TCGCTATGATCGCCGATGAGGACACCGTAGTTGGATTCTTGATGGCTGGA
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               151    -    201
UN39091        --> GTTGGTAATGTTGACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- GTTGGTAATGTTGACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
FD984345       <-- GTTGGTAATGTTGACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> GTTGGTAATGTTGACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
EY923819       --> GTTGGTAATGTTTACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
FD962912       --> GTTGGTAATGTTGACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
FD536436       --> GTTGGTAATGTTGACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
EY898073       --> GTTGGTAATGTTGACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
FD988466       --> GTTGGTAATGTTGACATCAGGAGGAAGACTAACTACCTCATCGTGGATTC
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               201    -    251
UN39091        --> AAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- AAATACAACTGTGAGACAAATTGAGGATGCTT-CAAGGAATTCTCATCGA
FD984345       <-- AAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCATCGA
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> AAATACAACTGTGAGACAAATTGAGGATGCTT-CAAGGAATTCTCATCGA
EY923819       --> AAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCATCGA
FD962912       --> AAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCATCGA
FD536436       --> AAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCATCGA
EY898073       --> AAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCATCGA
FD988466       --> AAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCATCGA
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               251    -    301
UN39091        --> GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
FD984345       <-- GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
EY923819       --> GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
FD962912       --> GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
FD536436       --> GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
EY898073       --> GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
FD988466       --> GAGATGATATTGCTATCATCCTCATCAGCCAATACGTTGCCAATATGATC
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               301    -    351
UN39091        --> CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
FD984345       <-- CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
EY923819       --> CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
FD962912       --> CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
FD536436       --> CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
EY898073       --> CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
FD988466       --> CGTTTCTTGGTGGATAGCTACAACAAGCCAGTGCCTGCGATTCTGGAGAT
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               351    -    401
UN39091        --> CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
FD984345       <-- CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
EY923819       --> CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
FD962912       --> CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
FD536436       --> CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
EY898073       --> CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
FD988466       --> CCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCGGTTCTCTCCC
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               401    -    451
UN39091        --> GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
FD984345       <-- GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
EY923819       --> GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
FD962912       --> GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
FD536436       --> GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
EY898073       --> GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
FD988466       --> GTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAGCGTTAAACATAG
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               451    -    501
UN39091        --> CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
FD984345       <-- CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
EY923819       --> CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
FD962912       --> CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
FD536436       --> CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
EY898073       --> CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
FD988466       --> CTCTCGCTGAACCTATATCATTTGTTTGTTTTTGACATTCTTGTATTTCT
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               501    -    551
UN39091        --> CCTTTCAAACTCAAAAACTTTCAATAAATGTAAAACTCTTGATTTTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- CCTTTCAAACTCAAAAACTTTCAATAAATGTAAAACTCTTGATTTTTATT
FD984345       <-- CCTTTCAAACTCAAAAACTTTCAATAAATGTAAAACTC............
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> CCTTTCAAACTCAAAAACTTTCAATAAATGTAAAACTCTTGATTTTTATT
EY923819       --> CCTTTCAAACTCAAAAACTTTCAATAAATGTAAAACTCTTGATTTTTATT
FD962912       --> CCTTTCAAACTCAAAAACTTTCAATAAATGTAAAACTCTTGATTTTTATT
FD536436       --> CCTTTCAAACTCAAAAA.................................
EY898073       --> CCTTTCAAACTCAAAAACTTTCAATAAATGTAAAACTCTTGATTTTTATT
FD988466       --> CCTTTCAAACTCAAAAACTTTCAATAAATGTAAAACTC............
EX775118       --> .........................AAATGTAAAACTCTTGATTTTTATT
FD544459       --> .........................AAATGTAAAACTCTTGATTTTTATT
FD959656       --> ..................................................
FD961494       --> ..................................................

               551    -    601
UN39091        --> CGGAGATGATTGTTATATTATTGAGAATCAATGGTAGCACCATCCGGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- CGGAGATGATTGTTATATT...............................
FD984345       <-- ..................................................
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> CGGAGATGATTGTTATATT...............................
EY923819       --> CGGAGATGATTGTTATATT...............................
FD962912       --> CGGAGATGATTGTTATATTATTGA..........................
FD536436       --> ..................................................
EY898073       --> CGGAGATGATTGTTATATT...............................
FD988466       --> ..................................................
EX775118       --> CGGAGATGATTGTTATATTATTGAGAATCAATGGTAGCACCATCCGGTTC
FD544459       --> CGGAAATGATTGTTATATTATTGAGAATCAATGGTAGCACCATCCGGTTC
FD959656       --> CGGAGATGATTGTTATATTATTGAGAATCAATGGTAGCACCATCCGGTTC
FD961494       --> ..................................................

               601    -    651
UN39091        --> CTTTTTCATTGAAATAATAGAAGATTGCCATTGGTGTTTGTATTCAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- ..................................................
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> CTTTTTCATTGAAATAATAGAAGATTGCCATTGGTGTTTGTATTCAAGAG
FD544459       --> CTTTTTCATTGAAATAATAGAAGATTGCCATTGGTGTTTGTATTCAAGAG
FD959656       --> CTTTTTCATTGAAATAATAGAAGATTGCCATTGGTATTTGTATTCAAGAG
FD961494       --> .TTTTTCATTGAAATAATAGAAGATTGCCATTGGTATTTGTATTCAAGAG

               651    -    701
UN39091        --> TCAAGGGCAGACTTTAAAGACTTAGTGAAGACTTCAAGCTCCTTAAGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- ...............................................TCC
FD963309       <-- ..................................................
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> TCAAGGGCAGACTTTAAAGACTTAGTGAAGACTTCAAGCTCCTTAAGTCC
FD544459       --> TCAAGGGCAGACTTTAAAGACTTAGTGAAGACTTCAAGCTCCTTAAGTCC
FD959656       --> TCAAGGGCAGACTTTAAAGACTTAGTGAAGACTTCAAGCTCCTTAAGTCC
FD961494       --> TCAAGGGCAGACTTTAAAGACTTAGTGAAGACTTCAAGCTCCTTAAGTCC

               701    -    751
UN39091        --> TTGCTCAGGTGACTCAGCCTCTCCCAATATCTTTACCATTGCGCTTCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- TTGCTCAGGTGACTCAGCCTCTCCCAATATCTTTACCATTGCGCTTCCTA
FD963309       <-- ...............................cTTACCAT-GCGCTTC-TA
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> TTGCTCAGGTGACTCAGCCTCTCCCAATATCTTTACCATTGCGCTTCCTA
FD544459       --> TTGCTCAGGTGACTCAGCCTCTCCCAATATCTTTACCATTGCGCTTCCTA
FD959656       --> TTGCTCAGGTGACTCAGCCTCTCCCAATATCTTTACCATTGCGCTTCCTA
FD961494       --> TTGCTCAGGTGACTCAGCCTCTCCCAATATCTTTACCATTGCGCTTCCTA

               751    -    801
UN39091        --> CAATGACTCCATCTGCTCCCCACTCAGCTACCTGTTTCACATGCTCAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- CAATGACTCCATCTGCTCCCCACTCAGCTACCTGTTTCACATGCTCAGGT
FD963309       <-- CAATGACTCCATCTGCTCCCCACTCAGCTAC-TGTTTCACATGCTCAGGT
EX771001       <-- ..................................................
FD965879       <-- ..................................................
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> CAATGACTCCATCTGCTCCCCACTCAGCTACCTGTTTCACATGCTCAGGT
FD544459       --> CAATGACTCCATCTGCTCCCCACTCAGCTACCTGTTTCACATGCTCAGGT
FD959656       --> CAATGACTCCATCTGCTCCCCACTCAGCTACCTGTTTCACATGCTCAGGT
FD961494       --> CAATGACTCCATCTGCTCCCCACTCAGCTACCTGTTTCACATGCTCAGGT

               801    -    851
UN39091        --> TTCGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGCCTCTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- TTCGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGCCTCTTTGAT
FD963309       <-- T-CGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGC-TCTTTGAT
EX771001       <-- ..CGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGCCTCTTTGAT
FD965879       <-- ..CGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGCCTCTTTGAT
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> TTCGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGCCTCTTTGAT
FD544459       --> TTCGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGCCTCTTTGAT
FD959656       --> TTCGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGCCTCTTTGAT
FD961494       --> TTCGATATGCCAAATCCAACAGCGACTGGCTTGCTTGTAGCCTCTTTGAT

               851    -    901
UN39091        --> CTGTTGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- CTGTTGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG
FD963309       <-- CTGTTGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG
EX771001       <-- CTGTGGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG
FD965879       <-- CTGTTGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> CTGTGGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG
FD544459       --> CTGTTGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG
FD959656       --> CTGTTGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG
FD961494       --> CTGTTGTAGAAGAGACTGAACGTGTTCGTTAACAGACTCTCTCGTACCAG

               901    -    951
UN39091        --> TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG
FD963309       <-- TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG
EX771001       <-- TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG
FD965879       <-- TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG
FD544459       --> TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG
FD959656       --> TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG
FD961494       --> TTACTCCTACCGAACTTACAAGATAGATGAATCCTTGGGATGCTTCAACG

               951    -   1001
UN39091        --> ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG
FD963309       <-- ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG
EX771001       <-- ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG
FD965879       <-- ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG
FD544459       --> ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG
FD959656       --> ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG
FD961494       --> ATGGCATTCATTCGTTCTTTGGGAGTTGTGGGTGTTGTGAGCAGTACAAG

               1001   -   1051
UN39091        --> TTCAATCTGATGCTTTTTAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD984345       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD548252       <-- TTCAATCTGATGCTTTTGAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963309       <-- TTCAATCTGATGCTTTTTAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA  Raphanus raphanistrum subsp. maritimus
EX771001       <-- TTCAGTCTGATGCTTTTGAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA  Raphanus raphanistrum subsp. landra
FD965879       <-- TTCAATCTGATGCTTTTTAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA  Raphanus raphanistrum subsp. maritimus
FD535603       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY923819       --> ..................................................  Raphanus raphanistrum subsp. landra
FD962912       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD536436       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY898073       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD988466       --> ..................................................  Raphanus raphanistrum subsp. landra
EX775118       --> TTCAGTCTGATGCTTTTGAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA  Raphanus raphanistrum subsp. landra
FD544459       --> TTCAATCTGATGCTTTTGAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959656       --> TTCAATCTGATGCTTTTTAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA  Raphanus raphanistrum subsp. maritimus
FD961494       --> TTCAATCTGATGCTTTTTAGCTTCCTTCCGCAGAGTCTCAGACTCTTCGA  Raphanus raphanistrum subsp. maritimus

               1051   -   1101
UN39091        --> GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA
FD963309       <-- GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA
EX771001       <-- GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA
FD965879       <-- GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA
FD544459       --> GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA
FD959656       --> GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA
FD961494       --> GTGGAACATCAGGTACAAGAAGCCCATGAACTCCAGCATCCTTAATGATA

               1101   -   1151
UN39091        --> GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA
FD963309       <-- GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA
EX771001       <-- GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA
FD965879       <-- GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA
FD544459       --> GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA
FD959656       --> GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA
FD961494       --> GTCATGTAGTTCTCGATTCCTCGCCTTAAGATCGGGTTGTAATACGTAAA

               1151   -   1201
UN39091        --> CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA
FD963309       <-- CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA
EX771001       <-- CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA
FD965879       <-- CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA
FD544459       --> CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA
FD959656       --> CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA
FD961494       --> CAATGCAATAGGACAAGATAACTGCGGTATAACCTCTTTAAGCATGGAGA

               1201   -   1251
UN39091        --> TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGCAGCAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGCAGCAGCC
FD963309       <-- TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGCAGCAGCC
EX771001       <-- TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGCAGCAGCC
FD965879       <-- TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGCAGCAGCC
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGCAGCAGCC
FD544459       --> TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGCAGCAGCC
FD959656       --> TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGCAGCAGCC
FD961494       --> TAATGGAGTTAAAGTTGGTTCCTTTAAGCAAAGAACGTCTCGC.......

               1251   -   1301
UN39091        --> TGGATTGCTGGACCATCAGCTAAAGGATCAGAGTAAGGAACACCGAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- TGGATTGCTGGACCATCAGCTAAAGGATCAGAGTAAGGAACACCGAGTTC
FD963309       <-- TGGATTGCTGGACCATCAGCTAAAGGATCAGAGTAAGGAACACCGAGTTC
EX771001       <-- TGGATTGCTGGACCATCAGCTAAAGGATCAGAGTAAGGAACACCGAGTTC
FD965879       <-- TGGATTGCTGGACCATCAGCTAAAGGATCAGAGTAAGGAACACCGAGTTC
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> TGGATTGCTGGACCATCAGCTAAAGGATCAGAGTAAG-AACACCGAGTTC
FD544459       --> T.................................................
FD959656       --> TGGATTGCTGGACCATCAGCTAAAGGATCAGAGTAAG-AACACCGAGTTC
FD961494       --> ..................................................

               1301   -   1351
UN39091        --> GATAATGTCGGAGCCACAAGAGTCGAGGACTTTGAGAGCTTTAGCTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- GATAAcc...........................................
FD963309       <-- GATAATGTCGGAGCCACAAGAGTCGAGGACTTTGAGAGCTTTAGCTGTTG
EX771001       <-- GATAATGTCGGAGCCACAAGAGTCGAGGACTTTGAGAGCTTTAGCTGTTG
FD965879       <-- GATAATGTCGGAGCCACAAGAGTCGAGGACTTTGAGAGCTTTAGCTGTTG
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> GATAATGTCG-AGCCACAAGAGTCGAGGACTTTGAGAGCTTTAGCTGTTG
FD544459       --> ..................................................
FD959656       --> GATAATGTCG-AGCCA..................................
FD961494       --> ..................................................

               1351   -   1401
UN39091        --> TGGAAAGATCTGGATCACCAGCTGTGATATATGGAATCAGAGCCACTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- ..................................................
FD963309       <-- TGGAAAGATCTGGATCACCAGCTGTGATATATGGAATCAGAGCCACTTTG
EX771001       <-- TGGAAAGATCTGGATCACCAGCTGTGATATACGGAATCAGAGCCACTTTG
FD965879       <-- TGGAAAGATCTGGATCACCAGCTGTGATATATGGAATCAGAGCCACTTTG
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> TGGAAAGATCTGGA....................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               1401   -   1451
UN39091        --> CGTTGCGACTTTAACCTAGCGAAAGTCTCTGATAGACCCACTGTTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- ..................................................
FD984345       <-- ..................................................
FD548252       <-- ..................................................
FD963309       <-- CGTTGCGACTTTAACCTAGCGAAAGTCTCTGATAGACCCACTGTTGTTGT
EX771001       <-- CGTTGCGACTTTAACCTAGCGAAAGTCTCTGATAGACCCACTGTTGTTGT
FD965879       <-- CGTTGCGACTTTAACCTAGCGAAAGTCTCTGATAGACCCACTGTTGTTGT
FD535603       --> ..................................................
EY923819       --> ..................................................
FD962912       --> ..................................................
FD536436       --> ..................................................
EY898073       --> ..................................................
FD988466       --> ..................................................
EX775118       --> ..................................................
FD544459       --> ..................................................
FD959656       --> ..................................................
FD961494       --> ..................................................

               1451   -   1501
UN39091        --> GGGAGGGTTGTTGAGAAGATCCATTGCGATTTTCCGAAGATCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531230       <-- .............................................
FD984345       <-- .............................................
FD548252       <-- .............................................
FD963309       <-- GGGAGGGTTGTTGAGAAGATCCATTGCGATTTTCC..........
EX771001       <-- GGGGGGGTTGTTGAGAAGATCCATTGCGATTTTTCGAAGATCCCT
FD965879       <-- GGGAGGGTTGTTGAGAAGATCCATTGCGATTTTCC..........
FD535603       --> .............................................
EY923819       --> .............................................
FD962912       --> .............................................
FD536436       --> .............................................
EY898073       --> .............................................
FD988466       --> .............................................
EX775118       --> .............................................
FD544459       --> .............................................
FD959656       --> .............................................
FD961494       --> .............................................