1      -     51
UN39256        --> GGGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- .GGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
EY925633       <-- .GGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
FD544724       <-- .GGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
EX765601       --> GGGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAACTCGCACGACGT
EV529182       --> .GGGCAGTAGTTCTACTCGTTTAGCTCCGGAGCTGCAATTCGCACGACGT
EX762353       --> .GGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
EY929117       --> .GGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
FD548550       --> .GGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
FD560242       --> .GGGCAGTAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
EV568500       --> ......ggAGTTCTACTCGTTTAGCTTCGGAGCTGCAATTCGCACGACGT
FY438360       --> .....................................ATTCGCACGACGT
FY438598       --> .....................................ATTCGCACGACGT
FY444097       --> .....................................ATTCGCACGACGT
FY448089       --> .....................................ATTCGCACGACGT
FY443051       --> ..................................................
FY445240       --> ..................................................
FY442163       --> ..................................................
FY435023       --> ..................................................

               51     -    101
UN39256        --> CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
EY925633       <-- CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FD544724       <-- CAAGATCCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
EX765601       --> CAATATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
EV529182       --> CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGTCCAAGA
EX762353       --> CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
EY929117       --> CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FD548550       --> CAAGATCCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FD560242       --> CAAGATGCCGTCGCACGAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
EV568500       --> CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FY438360       --> CA-GATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FY438598       --> CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FY444097       --> CA-GATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FY448089       --> CAAGATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FY443051       --> ...GATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FY445240       --> ...GATGCCGTCGCACAAGTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FY442163       --> ..................GTCTTTCATGATCAAGAAGAAGCTGGCCAAGA
FY435023       --> .........................................TGGCCAAGA

               101    -    151
UN39256        --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
EY925633       <-- AGCAAAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGTACCGAC
FD544724       <-- AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
EX765601       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
EV529182       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
EX762353       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
EY929117       --> AGCAAAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGTACCGAC
FD548550       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FD560242       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
EV568500       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FY438360       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FY438598       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FY444097       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FY448089       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FY443051       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FY445240       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FY442163       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC
FY435023       --> AGCAGAGGCAGAACAGGCCTATTCCTCACTGGATTCGTCTCCGGACCGAC

               151    -    201
UN39256        --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
EY925633       <-- AACACCATCAGGTACAACGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FD544724       <-- AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
EX765601       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
EV529182       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
EX762353       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
EY929117       --> AACACCATCAGGTACAACGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FD548550       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FD560242       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
EV568500       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FY438360       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FY438598       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FY444097       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FY448089       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FY443051       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FY445240       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FY442163       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT
FY435023       --> AACACCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCT

               201    -    251
UN39256        --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
EY925633       <-- CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FD544724       <-- CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
EX765601       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
EV529182       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
EX762353       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
EY929117       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FD548550       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FD560242       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
EV568500       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FY438360       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FY438598       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FY444097       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FY448089       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FY443051       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FY445240       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FY442163       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT
FY435023       --> CGGATTCTAAGTGAAAAGCTTCCTCCCAGAAGTGTCTTCTTTTCTGTTGT

               251    -    301
UN39256        --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- TGGTTTTTAGCATTTCCTTT-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925633       <-- TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus var. oleiformis
FD544724       <-- TGGTTTTTAGCATTTCCT-CTAAGTTTTTATGGATTTACGGTGTGACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765601       --> TGGTTTTTAGCATTTCCT-CTAAGTTTTTATGGATTTACGGTGTGACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529182       --> TGGTTTTTAGCATTTCCT-CTAAGTTTTTATGGATTTACGGTGTGACATT  Raphanus raphanistrum subsp. maritimus
EX762353       --> TGGTTTTTAGCATTTCCT-CTAAGTTTTTATGGATTTACGGTGTGACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY929117       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus var. oleiformis
FD548550       --> TGGTTTTTAGCATTTCCT-CTAAGTTTTTATGGATTTACGGTGTGACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD560242       --> TGGTTTTTAGCATTTCCT-CTAAGTTTTTATGGATTTACGGTGTGACATT  Raphanus raphanistrum subsp. landra
EV568500       --> TGGTTTTTAGCATTTCCT-CTAAGTTTTTATGGATTTACGGTGTGACATT  Raphanus raphanistrum subsp. landra
FY438360       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus cv GSK3-1
FY438598       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus cv GSK3-1
FY444097       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus cv GSK3-1
FY448089       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus cv GSK3-1
FY443051       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus cv GSK3-1
FY445240       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus cv GSK3-1
FY442163       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus cv GSK3-1
FY435023       --> TGGTTTTTAGCATTTCCT-C-AAGTTTTTATGGATTTACGGTGTGACATT  Raphanus sativus cv GSK3-1

               301    -    351
UN39256        --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
EY925633       <-- TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FD544724       <-- TTCATCTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
EX765601       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
EV529182       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
EX762353       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
EY929117       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FD548550       --> TTCATCTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FD560242       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
EV568500       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FY438360       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FY438598       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FY444097       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FY448089       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FY443051       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FY445240       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FY442163       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT
FY435023       --> TTCATTTCTCTGTATGACTTTTGTCTCGTTATGTTTGTTACCAAATTTCT

               351    -    401
UN39256        --> ATCTATAAAAAGCACTTCCTAGCAGTTTTGTTGTTTGGTTGATTCTATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- ATCTATAAAA-GCACTTCCTAGC...........................
EY925633       <-- ATCTATAAAAAGCACTTCCTAG............................
FD544724       <-- ATCTATAAAAAGCACTTCCTAG............................
EX765601       --> ATCTATAAAAAGCACTTCCTAGC...........................
EV529182       --> ATCTATAAAAAGCACTTCCTAGC...........................
EX762353       --> ATCTATAAAA-GCACTTCCTAGC...........................
EY929117       --> ATCTATAAAAAGCACTTCCTAG............................
FD548550       --> ATCTATAAAAAGCACTTCCTAGC...........................
FD560242       --> ATCTATAAAAAGCACTTCCTAGC...........................
EV568500       --> ATCTATAAAAAGCACTTCCTAGC...........................
FY438360       --> ATCTATAAAAAGCACTTCCTAGC...........................
FY438598       --> ATCTATAAAAAGCACTTCCTAGCAGTTTTGTTGTTTGGTTGATTCTATAC
FY444097       --> ATCTATAAAAAGCACTTCCTAGCAGTTTTGTTGTTTGGTTGATTCTATAC
FY448089       --> ATCTATAAAAAGCACTTCCTAGC...........................
FY443051       --> ATCTATAAAAAGCACTTCCTAGC...........................
FY445240       --> ATCTATAAAAAGCACTTCCTAGC...........................
FY442163       --> ATCTATAAAAAGCACTTCCTAGC...........................
FY435023       --> ATCTATAAAAAGCACTTCCTAGC...........................

               401    -    451
UN39256        --> CATGTTATGGCTACTCAGACCATGGTTTAGGATCTAGTTATCGCAGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- ..................................................
EY925633       <-- ..................................................
FD544724       <-- ..................................................
EX765601       --> ..................................................
EV529182       --> ..................................................
EX762353       --> ..................................................
EY929117       --> ..................................................
FD548550       --> ..................................................
FD560242       --> ..................................................
EV568500       --> ..................................................
FY438360       --> ..................................................
FY438598       --> CATGTTATGGCTACTCAGACCATGGTTTAGGATCTAGTTATCGCAGTTGT
FY444097       --> CATGTTATGGCTACTCAGACCATGGTTTAGGATCTAGTTATCGCAGTTGT
FY448089       --> ..................................................
FY443051       --> ..................................................
FY445240       --> ..................................................
FY442163       --> ..................................................
FY435023       --> ..................................................

               451    -    501
UN39256        --> AACTTGGTACTTGCGTAAAATCACTCAAGGTCTTGTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX766626       <-- .......................................
EY925633       <-- .......................................
FD544724       <-- .......................................
EX765601       --> .......................................
EV529182       --> .......................................
EX762353       --> .......................................
EY929117       --> .......................................
FD548550       --> .......................................
FD560242       --> .......................................
EV568500       --> .......................................
FY438360       --> .......................................
FY438598       --> AACTTGGTACTTGCGTAAAATCACTCAAGGTCTTGTGTC
FY444097       --> AACTTGGTACTTGCGT.......................
FY448089       --> .......................................
FY443051       --> .......................................
FY445240       --> .......................................
FY442163       --> .......................................
FY435023       --> .......................................