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Alignment for radish unigene UN39816

               1      -     51
UN39816        --> GGACTGTGAACGCCAGAGAAGCGGTCGTTGTAAAGATCTTGTGTTTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572993       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD555403       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD545048       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD531139       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY893719       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD960888       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY936219       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX894614       --> GGACTGTGAACGCCAGAGAAGCGGTCGCTGTAAAGATCTTGTGTTTTGCA  Raphanus sativus cv Early Scarlet Globe
EX898121       --> GGACTGTGAACGCCAGAGAAGCGGTCGTTGTAAAGATCTTGTGTTTTGCA  Raphanus sativus cv Early Scarlet Globe
FD559754       --> .GACTGTGAACGCCAGAGAAGCGGTCGCTGTAAAGATCTTGTGTTTTGCA  Raphanus raphanistrum subsp. landra
EY897382       --> ...ggGTGAACGCCAGAGAAGCGGTCGTTGTAAAGATCTTGTGTTTTGCA  Raphanus raphanistrum subsp. maritimus
EY941241       --> ...ggGTGAACGCCAGAGAAGCGGTCGCTGTAAAGATCTTGTGTTTTGCA  Raphanus sativus cv Early Scarlet Globe
FD532459       --> ......gGAACGCCAGAGAAGCGGTCGTTGTAAAGATCTTGTGTTTTGCA  Raphanus raphanistrum subsp. maritimus
FD548926       --> ....gggGAACGCCAGAGAAGCGGTCGTTGTAAAGATCTTGTGTTTTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966005       --> .....ggGAACGCCAGAGAAGCGGTCGTTGTAAAGATCTTGTGTTTTGCA  Raphanus raphanistrum subsp. maritimus
EV568212       --> ............ggAGAGAAGCGGTCGCTGTAAAGATCTTGTGTTTTGCA  Raphanus raphanistrum subsp. landra
FD965047       --> ...........................TTGTAAAGATCTTGTGTTTTGCA  Raphanus raphanistrum subsp. maritimus
EY940466       --> ................................................CA  Raphanus sativus cv Early Scarlet Globe
FD560565       --> ..................................................  Raphanus sativus var. oleiformis
FD535492       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN39816        --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- ..................................................
EV572993       <-- ..................................................
FD555403       <-- ..................................................
FD545048       <-- ..................................................
FD531139       <-- ..................................................
EY893719       <-- ..................................................
FD960888       <-- ..................................................
EY936219       <-- ..................................................
EX894614       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
EX898121       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
FD559754       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
EY897382       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
EY941241       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
FD532459       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
FD548926       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
FD966005       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
EV568212       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
FD965047       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
EY940466       --> ACTCTTTCTGTTCCGTTCTCCGTCGTAGCTTCTATTATAATCTCCGCAAG
FD560565       --> ...................CCGTCGTAGCTTCTATTATAATCTCCGCAAG
FD535492       --> ..................................................

               101    -    151
UN39816        --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- .....T-CTCTTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
EV572993       <-- .......CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
FD555403       <-- .....................................ATTCAGAGATGGC
FD545048       <-- ..................................................
FD531139       <-- ..................................................
EY893719       <-- ..................................................
FD960888       <-- ..................................................
EY936219       <-- ..................................................
EX894614       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
EX898121       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGTC
FD559754       --> TTTTTT-CTCCTTCGTGGGCCGAATAAATCAGCTTTGATTCAGAGATGGC
EY897382       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
EY941241       --> TTTTTTTCTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
FD532459       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
FD548926       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
FD966005       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
EV568212       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
FD965047       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
EY940466       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
FD560565       --> TTTTTT-CTCCTTCGTGGGCTGAATAAATCAGCTTTGATTCAGAGATGGC
FD535492       --> ..................................................

               151    -    201
UN39816        --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
EV572993       <-- GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD555403       <-- GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD545048       <-- .......................................TTCCAGATTGG
FD531139       <-- ..................................................
EY893719       <-- ..................................................
FD960888       <-- ..................................................
EY936219       <-- ..................................................
EX894614       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
EX898121       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD559754       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
EY897382       --> GGCTGCTTTGTTGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
EY941241       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD532459       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD548926       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD966005       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
EV568212       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD965047       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
EY940466       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD560565       --> GGCTGCTTTGTCGAGCAGGTTTCTCAACACCGTTCGTTCTTCCAGATTGG
FD535492       --> ..................................................

               201    -    251
UN39816        --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
EV572993       <-- CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD555403       <-- CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD545048       <-- CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD531139       <-- ...............................................ggA
EY893719       <-- ..................................................
FD960888       <-- ..................................................
EY936219       <-- ..................................................
EX894614       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
EX898121       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD559754       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
EY897382       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
EY941241       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD532459       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD548926       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD966005       --> TATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
EV568212       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD965047       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
EY940466       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD560565       --> CATCTGTATCATCAATCTATCAAAATGGGATGATGAGATACTCCACTACA
FD535492       --> ...............................................ggA

               251    -    301
UN39816        --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
EV572993       <-- GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD555403       <-- GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD545048       <-- GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD531139       <-- GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
EY893719       <-- GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD960888       <-- ..................................................
EY936219       <-- ..................................................
EX894614       --> GTTCCCGGCGATTCAGACACACATTATGACTTCAAGCCTACACAGAAAGT
EX898121       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD559754       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
EY897382       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
EY941241       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD532459       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD548926       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAG-
FD966005       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
EV568212       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD965047       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
EY940466       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD560565       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT
FD535492       --> GTTCCCGGCGATTCAGACACACATGATGACTTCAAGCCTACACAGAAAGT

               301    -    351
UN39816        --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
EV572993       <-- CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD555403       <-- CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD545048       <-- CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD531139       <-- CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
EY893719       <-- CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD960888       <-- ..................................................
EY936219       <-- ..................................................
EX894614       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
EX898121       --> CCCTTCTGGTTCCGCGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD559754       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
EY897382       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
EY941241       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTCGAGAATGATGTGA
FD532459       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD548926       --> CCCTTCTGGT-CCACGGACTCGCTCAAGGATCTCGTgaga..........
FD966005       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
EV568212       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD965047       --> CCCTTCTGGTTCCACGTACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
EY940466       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD560565       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA
FD535492       --> CCCTTCTGGTTCCACGGACTCGCTCAAGGATCTCGTTGAGAATGATGTGA

               351    -    401
UN39816        --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
EV572993       <-- AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD555403       <-- AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD545048       <-- AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD531139       <-- AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
EY893719       <-- AGGAAAATCCTGTGATGATTTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD960888       <-- ..........................AAAGGAGTCCCTGAAGCTCCTCAG
EY936219       <-- ........................................AGCTCCTCAG
EX894614       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
EX898121       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD559754       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
EY897382       --> AGGAAAATCCTGTGATGATCTACA..........................
EY941241       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD532459       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD548926       --> ..................................................
FD966005       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
EV568212       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD965047       --> GGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
EY940466       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD560565       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG
FD535492       --> AGGAAAATCCTGTGATGATCTACATGAAAGGAGTCCCTGAAGCTCCTCAG

               401    -    451
UN39816        --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
EV572993       <-- TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD555403       <-- TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD545048       <-- TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD531139       <-- TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
EY893719       <-- TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTTTCCAACAGTATAATGTTC
FD960888       <-- TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTTTCCAACAGTATAATGTTC
EY936219       <-- TGTGGCTTTAGCTCACT-TGCCGTTAGGGTTCTCCAACAGTATAATGTTC
EX894614       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
EX898121       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD559754       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
EY897382       --> ..................................................
EY941241       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD532459       --> TGTGGCTTTAGCTCACTTTGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD548926       --> ..................................................
FD966005       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
EV568212       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD965047       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
EY940466       --> TGTGGCTTTAGCTCACT-TGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD560565       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC
FD535492       --> TGTGGCTTTAGCTCACT-CGCCGTTAGGGTTCTCCAACAGTATAATGTTC

               451    -    501
UN39816        --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
EV572993       <-- CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD555403       <-- CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD545048       <-- CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD531139       <-- CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
EY893719       <-- CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD960888       <-- CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
EY936219       <-- CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
EX894614       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
EX898121       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD559754       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
EY897382       --> ..................................................
EY941241       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD532459       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD548926       --> ..................................................
FD966005       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
EV568212       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD965047       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
EY940466       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD560565       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG
FD535492       --> CTGTCGGTGCTAGGAACATTCTTGCTGATCCAGAGATTAAAGAAGCTGTG

               501    -    551
UN39816        --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
EV572993       <-- AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD555403       <-- AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD545048       <-- AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD531139       <-- AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
EY893719       <-- AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD960888       <-- AAATCCTTCAGCCATTGGCCAACATTTCCACAGATTTTCATCAAGGGAGA
EY936219       <-- AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
EX894614       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
EX898121       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD559754       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
EY897382       --> ..................................................
EY941241       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD532459       --> AAATCCTTCGGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD548926       --> ..................................................
FD966005       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCAT.........
EV568212       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD965047       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
EY940466       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD560565       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA
FD535492       --> AAATCCTTCAGCCATTGGCCAACATTTCCACAGATCTTCATCAAGGGAGA

               551    -    601
UN39816        --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
EV572993       <-- GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD555403       <-- GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD545048       <-- GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD531139       <-- GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
EY893719       <-- GTTTATTGGAGGTTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD960888       <-- GTTTATTGGAGGTTTTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
EY936219       <-- GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
EX894614       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
EX898121       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD559754       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
EY897382       --> ..................................................
EY941241       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD532459       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD548926       --> ..................................................
FD966005       --> ..................................................
EV568212       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD965047       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
EY940466       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD560565       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC
FD535492       --> GTTTATTGGAGGCTCTGACATCATCCTCAACATGCACAAGGAAGGTGAAC

               601    -    651
UN39816        --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
EV572993       <-- TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD555403       <-- TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD545048       <-- TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD531139       <-- TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
EY893719       <-- TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD960888       <-- TGGAGGAGAAGCTTAAAGACGTTTTTGCAAACCAAAAGTTTCAGTAAGCT
EY936219       <-- TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
EX894614       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
EX898121       --> TGGAGGAGAAGCTTTAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD559754       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
EY897382       --> ..................................................
EY941241       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD532459       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD548926       --> ..................................................
FD966005       --> ..................................................
EV568212       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD965047       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
EY940466       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD560565       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT
FD535492       --> TGGAGGAGAAGCTTAAAGACGTCTCTGCAAACCAAAAGTCTCAGTAAGCT

               651    -    701
UN39816        --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- TCTAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
EV572993       <-- TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
FD555403       <-- TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
FD545048       <-- TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
FD531139       <-- TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
EY893719       <-- TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
FD960888       <-- TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
EY936219       <-- TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
EX894614       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
EX898121       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGT-ATTATCAT-TTT
FD559754       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTat...........
EY897382       --> ..................................................
EY941241       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATCATCATGTTT
FD532459       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
FD548926       --> ..................................................
FD966005       --> ..................................................
EV568212       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
FD965047       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
EY940466       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT
FD560565       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTAATATCATGTTT
FD535492       --> TCCAAGCCTGAAGTTATGCATAACTGCTGAACGAAGTTATTATCATGTTT

               701    -    751
UN39816        --> TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
EV572993       <-- TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
FD555403       <-- TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
FD545048       <-- TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
FD531139       <-- TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
EY893719       <-- TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
FD960888       <-- TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
EY936219       <-- TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
EX894614       --> TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
EX898121       --> TATTT-GTTTTGT.....................................
FD559754       --> ..................................................
EY897382       --> ..................................................
EY941241       --> TATTTTGTTTTGTTT-GTTTATTTACATAAGAATGCATTTTGATGTACG-
FD532459       --> TATTTTGTTTTGTTTTGTTTATTTACATAAGA-TGCATTTTGATGTACGG
FD548926       --> ..................................................
FD966005       --> ..................................................
EV568212       --> TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG
FD965047       --> TATTTTGT..........................................
EY940466       --> TATTTTGTTTTGTTT-G-TTATTTACATAAGA-TGCATTTTGATGTACGG
FD560565       --> TATTTTGTTTTGTTTTGTTTATTTAC........................
FD535492       --> TATTTTGTTTTGTTTTGTTTATTTACATAAGAATGCATTTTGATGTACGG

               751    -    801
UN39816        --> TAATAATGAAAGTCTCGAGAGAACTTGGTATGAACAAAACTTGATATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- TAATAATGAAAGTCTCAAGAGAACTTGGTATGAACAAAACTTGATATTTA  Raphanus raphanistrum subsp. landra
EV572993       <-- TAATAATGAAAGTCTCAAGAGAACTTGGTATGAACAAAACTTGATATTTA  Raphanus raphanistrum subsp. landra
FD555403       <-- TAATAATGAAAGTCTCAAGAGAACTTGGTATGAACAAAACTTGATATTTA  Raphanus raphanistrum subsp. landra
FD545048       <-- TAATAATGAAAGTCTCGAGAGAACTTGGTATGAACAAAACTTGATATTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD531139       <-- TAATAATGAAAGTCTCGAGAGAACTTGGTATGAACAACACTTGATATTTA  Raphanus raphanistrum subsp. maritimus
EY893719       <-- TAATAATGAAAGTCTCGAGAGAACTTGGTATGAACAAAACTTGATATTTA  Raphanus raphanistrum subsp. maritimus
FD960888       <-- TAATAATGAAAGTCTCGAGAGAACTTGGTATGAACAAAACTTGATATTTA  Raphanus raphanistrum subsp. maritimus
EY936219       <-- TAATAGTGAAAGTCTCAAGAGAACTTGGTATGAACAAAACTTGATATTTA  Raphanus sativus cv Early Scarlet Globe
EX894614       --> TAATAATGAAAGTCT...................................  Raphanus sativus cv Early Scarlet Globe
EX898121       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD559754       --> ..................................................  Raphanus raphanistrum subsp. landra
EY897382       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY941241       --> TAATAATGAAAGTCTC-AGAGActtg........................  Raphanus sativus cv Early Scarlet Globe
FD532459       --> TAATAATGAAAGTCTCGAGAGActtg........................  Raphanus raphanistrum subsp. maritimus
FD548926       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966005       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV568212       --> TAATAATGAAAGTCTCAAGAGAACTTGGTATGAACAAAACTTGATATTTA  Raphanus raphanistrum subsp. landra
FD965047       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY940466       --> TAATAGTGAA-GTCTC-AGAGA-CTTGGTATGAcaaacttg.........  Raphanus sativus cv Early Scarlet Globe
FD560565       --> ..................................................  Raphanus sativus var. oleiformis
FD535492       --> TAATAATGAAAGTCTCGAGAGAACTTGGTATGAACAACACTTGATATTTA  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN39816        --> TTATTAAAGAACCTTTATTTTCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EX775814       <-- TTATTA...................
EV572993       <-- TTATTAAAGAAC.............
FD555403       <-- ct.......................
FD545048       <-- TTATTAAAGAACCTTTATTTTCACC
FD531139       <-- TTATTAAAGAAC.............
EY893719       <-- TTATTAAAGAACCTTT.........
FD960888       <-- TTATTAAAGAAC.............
EY936219       <-- TTATTAAAGAAC.............
EX894614       --> .........................
EX898121       --> .........................
FD559754       --> .........................
EY897382       --> .........................
EY941241       --> .........................
FD532459       --> .........................
FD548926       --> .........................
FD966005       --> .........................
EV568212       --> TTATTAAAGAAC.............
FD965047       --> .........................
EY940466       --> .........................
FD560565       --> .........................
FD535492       --> TTATTAAAGAAC.............