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Alignment for radish unigene UN41442

               -1     -     49
UN41442        --> ..CGTACCAGCAAGAAGTACTTTAGTAACTGAAAGTTTACATGGTACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> ..CGTACCAGCAAGAAGTACTTTAGTAACTGAAAGTTTACATGGTACAAT
EV571876       --> ..CGTACCAGCAAGAAGTACTTTAGTAACTGAAAGTTTACATGGTACAAT
EY893266       --> gtcaTACCAGCAAGAAGTACTTTAGTAACTGAAAGTTTACATGGTACAAT
EX892850       --> .....ACCAGCAAGAAGTACTTTAGTAACTGAAAGTTTACATGGTACAAT
FD976547       --> .....ACCAGCAAGAAGTACTTTAGTAACTGAAAGTTTACATGGTACAAT
FD566015       --> .....gCCAGCAAGAAGTACTTTAGTAACTGAAAGTTTACATGGTACAAT
FY428104       --> .......ccGCAAGAAGTACTTTAGTAACTGAAAGTTTACATGGTACAAT
FD553210       --> ..................................................
FD961734       --> ..................................................

               49     -     99
UN41442        --> ATGGATGCATATACTCTGCAAGCATGTCTATATTCAAAAGTACAAGCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> ATGGATGCATATACTCTGCAAGCATGTCTATATTCAAAAGTACAAGCACC
EV571876       --> ATGGATGCATATACTCTGCAAGCATGTCTATATTCAAAAGTACAAGCACC
EY893266       --> ATGGATGCATATACTCTGCAAGCATGTCTATATTCAAAAGTACAAGCACC
EX892850       --> ATGGATGCATATACTCTGCAAGCATGTCTATATTCAAAAGTACAAGCACC
FD976547       --> ATGGATGCATATACTCTGCAAGCATGTCTATATTCAAAAGTACAAGCACC
FD566015       --> ATGGATGCATATACTCTGCAAGCATGTCTATATTCAAAAGTACAAGCACC
FY428104       --> ATGGATGCATATACTCTGCAAGCATGTCTATATTCAAAAGTACAAGCACC
FD553210       --> .................GCAAGCATGTCTATGTTCAAAAGTACAAGCACC
FD961734       --> ..................................................

               99     -    149
UN41442        --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACAACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACAACAAA
EV571876       --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACAACAAA
EY893266       --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACAACAAA
EX892850       --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACAACAAA
FD976547       --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACAACAAA
FD566015       --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACAACAAA
FY428104       --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACAACAAA
FD553210       --> AAACAAGAGACACTTGAACTTACATAACATGACTACGTACATACTACAAA
FD961734       --> ..................................................

               149    -    199
UN41442        --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
EV571876       --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
EY893266       --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
EX892850       --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
FD976547       --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
FD566015       --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
FY428104       --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
FD553210       --> CGGAACTACTCACTTGCGATCAAGAACCCATACGGCAGGCTTAAAAACCG
FD961734       --> ..................................................

               199    -    249
UN41442        --> ACCCAAACCATATCTTACCATCATCTCTCTCATAAGCCTCACTCACATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> ACCCAAACCATATCTTACCATCATCTCCCTCATAAGCCTCACTCACATAC
EV571876       --> ACCCAAACCATATCTTACCATCATCTCCCTCATAAGCCTCACTCACATAC
EY893266       --> ACCCAAACCATATCTTACCATCATCTCTCTCATAAGCCTCACTCACATAC
EX892850       --> ACCCAAACCATATCTTACCATCATCTCTCTCATAAGCCTCACTCACATAC
FD976547       --> ACCCAAACCATATCTTACCATCATCTCTCTCATAAGCCTCACTCACATAC
FD566015       --> ACCCAAACCATATCTTACCATCATCTCTCTCATAAGCCTCACTCACATAC
FY428104       --> ACCCAAACCATATCTTACCATCATCTCTCTCATAAGCCTCACTCACATAC
FD553210       --> ACCCAAACCATATCTTACCATCATCTCTCTCATAAGCCTCACTCACATAT
FD961734       --> ..................................................

               249    -    299
UN41442        --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
EV571876       --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
EY893266       --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
EX892850       --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
FD976547       --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
FD566015       --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
FY428104       --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
FD553210       --> TGCATTGTCTTCCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT
FD961734       --> ...........CCCTTCTTTGTCCTCAAGTATCTCAACTATCTCCCCCGT

               299    -    349
UN41442        --> CTCCCCGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> CTCCCCGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA
EV571876       --> CTCCCCGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA
EY893266       --> CTCCCCGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA
EX892850       --> CTCCCCGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA
FD976547       --> CTCCACGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA
FD566015       --> CTCCCCGGATATTTTGACGGCGACCCTATGCGGCTTAAACCCGTTCACTA
FY428104       --> CTCCCCGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA
FD553210       --> CTCCCCGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA
FD961734       --> CTCCCCGGATATTTTGACGGCGACCCCATGCGGCTTAAACCCGTTCACTA

               349    -    399
UN41442        --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..............................TTTCAACCAACTTAC-TAAG  Raphanus raphanistrum subsp. landra
EV566802       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV566832       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV571849       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAG  Raphanus raphanistrum subsp. landra
EV571876       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAG  Raphanus raphanistrum subsp. landra
EY893266       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAC  Raphanus raphanistrum subsp. maritimus
EX892850       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAC  Raphanus sativus var. oleiformis
FD976547       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566015       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAC  Raphanus sativus var. oleiformis
FY428104       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAC  Raphanus sativus cv GSK3-1
FD553210       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAG  Raphanus raphanistrum subsp. landra
FD961734       --> ACCCAATCAACAACTCTAACTTCACCGTCTTTTCAACCAACTTACCTAAG  Raphanus raphanistrum subsp. maritimus

               399    -    449
UN41442        --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTT-CTTACAGTG
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
EV571876       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
EY893266       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
EX892850       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
FD976547       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
FD566015       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
FY428104       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
FD553210       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG
FD961734       --> CACTGATAATTATTCACGGCCAGTCTTCCAAATAAGTTTTTCTTACAGTG

               449    -    499
UN41442        --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
EV566802       <-- ..................................................
EV566832       <-- ..................................................
EV571849       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
EV571876       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
EY893266       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
EX892850       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAAAGGATGTTGTCAGGAT
FD976547       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
FD566015       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
FY428104       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
FD553210       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT
FD961734       --> TATGCCAATCCAAAAATCACCCGTGGGTGTTAAACGGATGTTGTCAGGAT

               499    -    549
UN41442        --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
EV566802       <-- ....................................CTTTAGGACCTTTA
EV566832       <-- ..................................................
EV571849       --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
EV571876       --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
EY893266       --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
EX892850       --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
FD976547       --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
FD566015       --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
FY428104       --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
FD553210       --> AACCAGGAACCTTGGCGAAGATATCACGAGTCCCGGCTTTAGGACCTTTA
FD961734       --> AACCAGGAACCTTGGCGAAAATATCACGAGTCCCGGCTTTAGGACCTTTA

               549    -    599
UN41442        --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
EV566802       <-- ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
EV566832       <-- ..................................................
EV571849       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
EV571876       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
EY893266       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
EX892850       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
FD976547       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
FD566015       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACCCACATGAGATTAAGAA
FY428104       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
FD553210       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAGAA
FD961734       --> ATCCAATATCTATGGACAAGGCCAGTGGCAGACTCACATGAGATTAAAAA

               599    -    649
UN41442        --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
EV566802       <-- AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
EV566832       <-- ..................................................
EV571849       --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
EV571876       --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
EY893266       --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
EX892850       --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
FD976547       --> AGATCTATCTTTGTTTAGAGCCAAACCGTCGTTACAACGGAGATTGTCCA
FD566015       --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
FY428104       --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
FD553210       --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA
FD961734       --> AGATCTATCTTTGTTTAGAGCCAAACCGTTGTTACAACGGAGATTGTCCA

               649    -    699
UN41442        --> TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
EV566802       <-- TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
EV566832       <-- ....................GTCTTCTTGTTGTATCTGATCACTCTTCCT
EV571849       --> TGACAACTTTGGCCTCCTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
EV571876       --> TGACAACTTTGGCCTCCTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
EY893266       --> TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
EX892850       --> TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
FD976547       --> TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
FD566015       --> TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
FY428104       --> TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
FD553210       --> TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT
FD961734       --> TGACAACTTTGGCCTCTTTCGTCTTCTTGTTGTATCTGATCACTCTTCCT

               699    -    749
UN41442        --> GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
EV566802       <-- GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
EV566832       <-- GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
EV571849       --> GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
EV571876       --> GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
EY893266       --> GACCGCTCACCGTTGACAGTCACGTAAAATA...................
EX892850       --> GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
FD976547       --> GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
FD566015       --> GACCGCTCACCGTTG...................................
FY428104       --> GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
FD553210       --> GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT
FD961734       --> GACCGCTCACCGTTGACAGTCACGTAAAATACTTCCCTGAAATGATACTT

               749    -    799
UN41442        --> GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
EV566802       <-- GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
EV566832       <-- GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
EV571849       --> GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
EV571876       --> GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
EY893266       --> ..................................................
EX892850       --> GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAta.....
FD976547       --> GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
FD566015       --> ..................................................
FY428104       --> GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
FD553210       --> GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA
FD961734       --> GTCACTACTATCATTGAAGTAGAAGACATCTTCCTCTTCGTCAATATCCA

               799    -    849
UN41442        --> TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC
EV566802       <-- TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC
EV566832       <-- TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC
EV571849       --> TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC
EV571876       --> TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> TCTGGTTCGCAAACATT.................................
FD566015       --> ..................................................
FY428104       --> TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC
FD553210       --> TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC
FD961734       --> TCTGGTTCGCAAACATTACTTTGCGACCTTCAACCTGGTCCACTACCAAC

               849    -    899
UN41442        --> TCAGCCAAGCCTCCTTCTGGCCCCACTTTCATGACCCCAAAGTAACCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- TCAGCCAAGCCTCCTTCTGGCCCCACTTTCATGACCCCAAAGTAACCATC
EV566802       <-- TCAGCCAAGCCTCCTTCTGGCCCCACTTTCATGACCCCAAAGTAACCATC
EV566832       <-- TCAGCCAAGCCTCCTTCTGGCCCCACTTTCATGACCCCAAAGTAACCATC
EV571849       --> TCAGCCAAGCCTCCTTCTGGCC............................
EV571876       --> TCAGCCAAGCCTCCTTCTGGCCCCACTTTCATGACCCCAAAGTAACCATC
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> TCAGCCAAGCCTCCTTCTGGCCCCACTTTCATGACCC-AAAGTA-CCATC
FD961734       --> TCAGCCAAGCCTCCTTCTGGCCCCACTTTCATGACCCCAAAGTAACCATC

               899    -    949
UN41442        --> ACAGATGTACAAGTCTCCTGTTTTCTTCTCGAAACTAAGTCCAAGTGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ACAGATGTACAAGTCTCCTGTTTTCTTCTCGAAACTAAGTCCAAGTGGCC
EV566802       <-- ACAGATGTACAAGTCTCCTGTTTTCTTCTCGAAACTAAGTCCAAGCGGCC
EV566832       <-- ACAGATGTACAAGTCTCCTGTTTTCTTCTCGAAACTAAGTCCAAGCGGCC
EV571849       --> ..................................................
EV571876       --> ACAGATGTA.........................................
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> ACAGATGTACAAGTCTCtgtt.............................
FD961734       --> ACAGATGTACAAGTCTCCTGTTTTCTTCTCGAAACTAAGTCCAAGTGGCC

               949    -    999
UN41442        --> TTCCACATGTAGGTACTACTTCATGCCGTGAACAGTTTCCTCTGTGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- TTCCACATGTAGGTACTACTTCATGCCGTGAACAGTTTCCTCTGTGAGGA
EV566802       <-- TTCCACATGTAGGTACTACTTCATGCCGTGAACAGTTTCCTCTGTGAGGA
EV566832       <-- TTCCACATGTAGGTACTACTTCATGCCGTGAACAGTTTCCTCTGTGAGGA
EV571849       --> ..................................................
EV571876       --> ..................................................
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> ..................................................
FD961734       --> TTCCACATGTAGGTACTACTTCATGCCGTGAACAGTTTCCTCTG......

               999    -   1049
UN41442        --> GATGTGTATGCGAACTCAACCCAACCGAGACCATCTCCACGCCACTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- GATGTGTATGCGAACTCAACCCAACCGAGACCATCTCCACGCCACTTGAG
EV566802       <-- GATGTGTATGCGAACTCAACCCAACCGAGACCATCTCCACGCCACTTGAG
EV566832       <-- GATGTGTATGCGAACTCAACCCAACCGAGACCATCTCCACGCCACTTGAG
EV571849       --> ..................................................
EV571876       --> ..................................................
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> ..................................................
FD961734       --> ..................................................

               1049   -   1099
UN41442        --> AATACGGCCGTCCACAACAGCAGCATAAGGACCCCCTCCTTGCGGATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- AATACGGCCGTCCACAACAGCAGCATAAGGACCCCCTCCc..........
EV566802       <-- AATACGGCCGTCCACAACAGCAGCATAAGGACCCCCTCCTTGCGGATCCC
EV566832       <-- AATACGGCCGTCCACAACAGCAGCATAAGGACCCCCTCCTTGCGGATCCC
EV571849       --> ..................................................
EV571876       --> ..................................................
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> ..................................................
FD961734       --> ..................................................

               1099   -   1149
UN41442        --> ACTCGATGCTCTCTGGTCCATCGACAGGAAGTGGTATGGTCTTAGCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ACTCGATGCTCTCTGGTCCATCGACAGGAAGTGGTATGGTCTTAGCCATC
EV566832       <-- ACTCGATGCTCTCTGGTCCATCGACAGGAAGTGGTATGGTCTTAGCCATC
EV571849       --> ..................................................
EV571876       --> ..................................................
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> ..................................................
FD961734       --> ..................................................

               1149   -   1199
UN41442        --> GACAATACATTTTTGGTGCCGTTCAAATTGTCCGGCGCGATTAGGATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- GACAATACATTTTTGGTGCCGTTCAAATTGTCCGGCGCGATTAGGATCTG
EV566832       <-- GACAATACATTTTTGGTGCCGTTCAAATTGTCCGGCGCGATTAGGATCTG
EV571849       --> ..................................................
EV571876       --> ..................................................
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> ..................................................
FD961734       --> ..................................................

               1199   -   1249
UN41442        --> ATACGAAATTACGGAAAAGACGGCAAAAGTAGCCGGAACAACGGCCCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- ATACGAAATTACGGAAAAGACGGCAAAAGTAGCCGGAACAACGGCCCAAG
EV566832       <-- ATACGAAATTACGGAAAAGACGGCAAAAGTAGCCGGAACAACGGCCCAAG
EV571849       --> ..................................................
EV571876       --> ..................................................
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> ..................................................
FD961734       --> ..................................................

               1249   -   1299
UN41442        --> TCGGAATTTTCTCACTAATCGGCATTATTTTCAAGAGGCAAATATGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- ..................................................
EV566802       <-- TCGGAATTTTCTCACTAATCGGCATTATTTTCAAGAGGCAAATATGTTGG
EV566832       <-- TCGGAATTTTCTCACTAATCGGCATTATTTTCAAGAGGCAAATATGTTGG
EV571849       --> ..................................................
EV571876       --> ..................................................
EY893266       --> ..................................................
EX892850       --> ..................................................
FD976547       --> ..................................................
FD566015       --> ..................................................
FY428104       --> ..................................................
FD553210       --> ..................................................
FD961734       --> ..................................................

               1299   -   1349
UN41442        --> TTGAAGAGACGTGTGTAACACTAGCTGTTGTTAGCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557010       <-- .......................................
EV566802       <-- TTGAAGAGACGTGTGTAACACTAGCTGTTGTTAGCTTCC
EV566832       <-- TTGAAGAGACGTGTGTAACACTAGCTGTTGTTAGCTTCC
EV571849       --> .......................................
EV571876       --> .......................................
EY893266       --> .......................................
EX892850       --> .......................................
FD976547       --> .......................................
FD566015       --> .......................................
FY428104       --> .......................................
FD553210       --> .......................................
FD961734       --> .......................................