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Alignment for radish unigene UN42006

               1      -     51
UN42006        --> GGAAAACAACAGTCTACTTTTCTTAAGAAATGCATTGTCTGTTTATATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ..AAAACAACAGTCTACTTTTCTTAAGAAATGCATTGTCTGTTTATATGT
FD559235       <-- ..................................................
EY901294       <-- ..................................................
FD559234       <-- ..................................................
FD987070       <-- ..................................................
FD536038       <-- ..................................................
EY896641       --> GGAAAACAACAGTCTACTTTTCTTAAGAAATGCATTGTCTGTTTATATGT
FD531576       --> GGAAAACAACAGTCTACTTTTCTTAAGAAATGCATTGTCTGTTTATATGT
FD554973       --> ....................................gcCTGTTTATATGT
FD554974       --> ....................................gcCTGTTTATATGT
FD983184       --> ..................................................

               51     -    101
UN42006        --> CACTTCCAAACATTATCTATCATCGACTCCAAGAAAAGGAAGAGGCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- CACTTCCAAACATTATCTATCATCGACTCCAAGAAAAGGAAGAGGCAACT
FD559235       <-- ..................................................
EY901294       <-- ..................................................
FD559234       <-- ..................................................
FD987070       <-- ..................................................
FD536038       <-- ..................................................
EY896641       --> CACTTCCAAACATTATCTATCATCGACTCCAAGAAAAGGAAGAGGCAACT
FD531576       --> CACTTCCAAACATTATCTATCATCGACTCCAAGAAAAGGAAGAGGCAACT
FD554973       --> CACTTCCAAACATTATCTATCATCGACTCCAAGAAAAGGAAGAGGCAACT
FD554974       --> CACTTCCAAACATTATCTATCATCGACTCCAAGAAAAGGAAGAGGCAACT
FD983184       --> ....................................AGGAAGAGGCAACT

               101    -    151
UN42006        --> GTATAATAGTAATGTTTATTTACACAGGAAATGCAAGTGGGTAAGTGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- GTATAATAGTAATGTTTATTTACACAGGAAATGCAAGTGGGTAAGTGTTA
FD559235       <-- ................................................tt
EY901294       <-- ..................................................
FD559234       <-- ..................................................
FD987070       <-- ..................................................
FD536038       <-- ..................................................
EY896641       --> GTATAATAGTAATGTTTATTTACACAGGAAATGCAAGTGGGTAAGTGTTA
FD531576       --> GTATAATAGTAATGTTTATTTACACAGGAAATGCATGTGGGTAAGTGTTA
FD554973       --> GTATAATAGTAATGTTTATTTACACAGGAAATGCAAGTGGGTAAGTGTTA
FD554974       --> GTATAATAGTAATGTTTATTTACACAGGAAATGCAAGTGGGTAAGTGTTA
FD983184       --> GTATAATAGTAATGTTTATTTACACAGGAAATGCAAGTGGGTAAGTGTTA

               151    -    201
UN42006        --> TTTGGACTGGACCAAGTACATAGAAGTGTTGATATATGTACTAGTTAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- TTTGGACTGGACCAAGTACATAGAAGTGTTGATATATGTACTAGTTAAGT
FD559235       <-- TTTGGACTG-ACCAAGTACATAGA-GTGTTGATATATGTACTAGTTAAGT
EY901294       <-- ........GGACCAAGTACATAGAAGTGTTGATATATGTACTAGTTAAGT
FD559234       <-- ...............GTACATAGAAGTGTTGATATATGTACTAGTTAAGT
FD987070       <-- ..................................................
FD536038       <-- ..................................................
EY896641       --> TTTGGACTGGACCAAGTACATAGAAGTGTTGATATATGTACTAGTTAAGT
FD531576       --> TTTGGACTGGACCAAGTACATAGAAGTGTTGATATATGTACTAGTTAAGT
FD554973       --> TTTGGACTGGACCAAGTACATAGAAGTGTTGATATATGTACTAGTTAAGT
FD554974       --> TTTGGACTGGACCAAGTACATAGAAGTGTTGATATATGTACTAGTTAAGT
FD983184       --> TTTGGACTGGACCAAGTACATAGAAGTGTTGATATATGTACTAGTTAAGT

               201    -    251
UN42006        --> TTTTGAGTGGCTAATGTGTATCAACTGAGCATCGATGGATGGCCACCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- TTTTGAGTGGCTAATGTGTATCAACTGAGCATCGATGGATGGCCACCACT
FD559235       <-- TTT-GAGTGGCTAATGTGTATCAACTGAGCATCGATGGATAGCCACCACT
EY901294       <-- TTT-GAGTGGCTAATGTGTATCAACTGAGCATCGATGGATGGCCACCACT
FD559234       <-- TTT-GAGTGGCTAATGTGTATCAACTGAGCATCGATGGATAGCCACCACT
FD987070       <-- .....AGTGGCTAATGTGTATCAACTGAGCATCGATGGATGGCCACCACT
FD536038       <-- ....................................GGATGGCCACCACT
EY896641       --> TTTTGAGTGGCTAATGTGTATCAACTGAGCATCGATGGATGGCCACCACT
FD531576       --> TTTTGAGTGGCTAATGTGTATCAACTGAGCATCGATGGATGGCCACCACT
FD554973       --> TTTTGAGTGGCTAATGTGTATCAACTGAGCATCGATGGATAGCCACCACT
FD554974       --> TTTTGAGTGGCTAATGTGTATCAACTGAGCATCGATGGATAGCCACCACT
FD983184       --> TTTTGAGTGGCTAATGTGTATCAACTGAGCATCGATGGATGGCCACCACT

               251    -    301
UN42006        --> GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
FD559235       <-- GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
EY901294       <-- GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
FD559234       <-- GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
FD987070       <-- GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
FD536038       <-- GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
EY896641       --> GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
FD531576       --> GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
FD554973       --> GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
FD554974       --> GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC
FD983184       --> GTGGAGCATCCTCTTTAAAATATCCATCCCAAAAGTTGAGTCTGATGAGC

               301    -    351
UN42006        --> TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
FD559235       <-- TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACAC-GTCGTTGATTGGA
EY901294       <-- TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
FD559234       <-- TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
FD987070       <-- TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
FD536038       <-- TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
EY896641       --> TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
FD531576       --> TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
FD554973       --> TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
FD554974       --> TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA
FD983184       --> TTGGCATAGTGATCTCAAAAGGGCAGTAGATCACACCGTCGTTGATTGGA

               351    -    401
UN42006        --> GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
FD559235       <-- GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
EY901294       <-- GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
FD559234       <-- GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
FD987070       <-- GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
FD536038       <-- GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
EY896641       --> GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
FD531576       --> GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
FD554973       --> GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
FD554974       --> GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC
FD983184       --> GGAACGTGGTCTTTTTTCTCATTCACGAATTTTATGATTTGGAATAAGAC

               401    -    451
UN42006        --> TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAGAACTTCTCTCCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAGAACTTCTCTCCTCAG
FD559235       <-- TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAGAACTTCTCTCCTCAG
EY901294       <-- TTCTTGAAGGGATTGCTCAAGCATGGTCCTACGAGAACTTCTCTCCTCAG
FD559234       <-- TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAGAACTTCTCTCCTCAG
FD987070       <-- TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAGAACTTCTCTCCTCAG
FD536038       <-- TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAGAACTTCTCTCCTCAG
EY896641       --> TTCTTGAAGGGATTGCTCAAGCATGGTCCTACGAAAACTTCTCTCCTCAG
FD531576       --> TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAGAACTTCTCTCCTCAG
FD554973       --> TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAAAACTTCTCTCCTCAG
FD554974       --> TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAAAACTTCTCTCCTCAG
FD983184       --> TTCTTGAAGGGATTGCTCAAGCATTGTCCTACGAGAACTTCTCTCCTCAG

               451    -    501
UN42006        --> ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
FD559235       <-- ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
EY901294       <-- ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
FD559234       <-- ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
FD987070       <-- ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
FD536038       <-- ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
EY896641       --> ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
FD531576       --> ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
FD554973       --> ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
FD554974       --> ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA
FD983184       --> ACGCCTCTCCAGTGTCCATAACTAGTTTAGAGTGGTGGGAAGGAGATTTA

               501    -    551
UN42006        --> GTCTGGTGAAGCACATTGAGATTGACGTACCATTGTTCCCAATACGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- GTCTGGTGAAGCACATTGAGATTGACGTACCATTGTTCCCAATACGAACG
FD559235       <-- GTCTGGTGAAGCACATTGAGATTGACGTACCGTTGTTCCCAATACGAACG
EY901294       <-- GTCTGGTGAAGCACATTGAGATTGACGTACCATTGTTCCCAATACGAACG
FD559234       <-- GTCTGGTGAAGCACATTGAGATTGACGTACCGTTGTTCCCAATACGAACG
FD987070       <-- GTCTGGTGAAGCACATTGAGATTGACGTACCATTGTTCCCAATACGAACG
FD536038       <-- GTCTGGTGAAGCACATTGAGATTGACGTACCATTGTTCCCAATACGAACG
EY896641       --> GTCTGGTGAAGCACATTGAGATTGACGTACCATTGTTCCCAATACGAACG
FD531576       --> GTCTGGTGAAGCACATTGAGATTGACGTACCATTGTTCCCAATACGAACG
FD554973       --> GTCTGGTGAAGCACATTGAGATTGACGTACCGTTGTTCCCAATACGAACG
FD554974       --> GTCTGGTGAAGCACATTGAGATTGACGTACCGTTGTTCCCAATACGAACG
FD983184       --> GTCTGGTGAAGCACATTGAGATTGACGTACCATTGTTCCCAATACGAACG

               551    -    601
UN42006        --> TTGTTTATTATTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- TTGTTTATTGTTGAACCAAGACGGTTGTTTGCTTATGACTTCATAAAAGG  Raphanus raphanistrum subsp. maritimus
FD559235       <-- TTGTTTATTATTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. landra
EY901294       <-- TTGTTTATTGTTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. maritimus
FD559234       <-- TTGTTTATTATTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. landra
FD987070       <-- TTGTTTATTATTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. landra
FD536038       <-- TTGTTTATTGTTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. maritimus
EY896641       --> TTGTTTATTGTTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. maritimus
FD531576       --> TTGTTTATTGTTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. maritimus
FD554973       --> TTGTTTATTATTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. landra
FD554974       --> TTGTTTATTATTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. landra
FD983184       --> TTGTTTATTATTGAACCAAGACGGTTGTTTGCTTTTGACTTCATAAAAGG  Raphanus raphanistrum subsp. landra

               601    -    651
UN42006        --> ATAAACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ATACACATATCc......................................  Raphanus raphanistrum subsp. maritimus
FD559235       <-- ATAAACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. landra
EY901294       <-- ATACACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. maritimus
FD559234       <-- ATAAACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. landra
FD987070       <-- ATAAACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. landra
FD536038       <-- ATACACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. maritimus
EY896641       --> ATACACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. maritimus
FD531576       --> ATACACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. maritimus
FD554973       --> ATAAACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. landra
FD554974       --> ATAAACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. landra
FD983184       --> ATAAACATATCTGACTTTTCTTGTTGGGGTGTTTCTCAATCCAGCTTATG  Raphanus raphanistrum subsp. landra

               651    -    701
UN42006        --> AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ..................................................
FD559235       <-- AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
EY901294       <-- AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
FD559234       <-- AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
FD987070       <-- AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
FD536038       <-- AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
EY896641       --> AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
FD531576       --> AAGTGCTCAATCGTCTCATCAATCTTC.......................
FD554973       --> AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
FD554974       --> AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA
FD983184       --> AAGTGCTCAATCGTCTCATCAATCTTCTTTTCTACCTCTATTTCACCACA

               701    -    751
UN42006        --> TTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATCTTTAGGGCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ..................................................
FD559235       <-- TTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATCTTTAGGGCGGA
EY901294       <-- CTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATCTTTAGGGCGGA
FD559234       <-- TTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATCTTTAGGGCGGA
FD987070       <-- TTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATCTTTAGGGCGGA
FD536038       <-- CTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATCTTTAGGGCGGA
EY896641       --> CTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATCTTTAGGGCGGA
FD531576       --> ..................................................
FD554973       --> TTGTACATAAGTGATGTCAAAG............................
FD554974       --> TTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATC...........
FD983184       --> TTGTACATAAGTGATGTCAAAGAGCTCCAAATCAATATCTTTAGGGCG..

               751    -    801
UN42006        --> TTAGACCAAGTGCACGGTGAAAGACAATTGTATGTAAAATGCAGCGTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559235       <-- TTAGACCAAGTGCACGGTGAAAGACAATTGTATGTAAAATGCAGCCTAGA  Raphanus raphanistrum subsp. landra
EY901294       <-- TAAGACCAAGTGCACGGTGAAAGACAATTGTATGTAAAATACAGCGTAGA  Raphanus raphanistrum subsp. maritimus
FD559234       <-- TTAGACCAAGTGCACGGTGAAAGACAATTGTATGTAAAATGCAGCCTAGA  Raphanus raphanistrum subsp. landra
FD987070       <-- TTAGACCAAGTGCACGGTGAAAGACAATTGTATGTAAAATGCAGCGTAGA  Raphanus raphanistrum subsp. landra
FD536038       <-- TAAGACCAAGTGCACGGTGAAAGACAATTGTATGTAAAATACAGCGTAGA  Raphanus raphanistrum subsp. maritimus
EY896641       --> TAAGACCAAGTG......................................  Raphanus raphanistrum subsp. maritimus
FD531576       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD554973       --> ..................................................  Raphanus raphanistrum subsp. landra
FD554974       --> ..................................................  Raphanus raphanistrum subsp. landra
FD983184       --> ..................................................  Raphanus raphanistrum subsp. landra

               801    -    851
UN42006        --> ACCTCGCGTATCTCGAAGGATTCCACTTCCAGTTCCTTCAGGTGACAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ..................................................
FD559235       <-- ACCTCGCGTATCTCGAGGGATTCCACTTCCAGTTCCTTCAGGTGACAAAC
EY901294       <-- ACCTCGCGTATCTCGAAGGATTCCACTTCCAGTTCCTTCAGGTGCCAAAC
FD559234       <-- ACCTCGCGTATCTCGAGGGATTCCACTTCCAGTTCCTTCAGGTGACAAAC
FD987070       <-- ACCTCGCGTATCTCGAAGGATTCCACTTCCAGTTCCTTCAGGTGACAAAC
FD536038       <-- ACCTCGCGTATCTCGAAGGATTCCACTTCCAGTTCCTTCAGGTGCCAAAC
EY896641       --> ..................................................
FD531576       --> ..................................................
FD554973       --> ..................................................
FD554974       --> ..................................................
FD983184       --> ..................................................

               851    -    901
UN42006        --> TTCGCAATTCATATTTGACCCCCAGAAAGTTTCGACAAGGAAGAAGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ..................................................
FD559235       <-- TTCGCAATTCATATTTGACCCCCAGAAAGTTTCGACAAGGAAGAAGCAGT
EY901294       <-- TTCGCAATTCATATTTGACCCCCAGAAAGTTTCGACAAGGAAAAAGCAGT
FD559234       <-- TTCGCAATTCATATTTGACCCCCAGAAAGTTTCGACAAGGAAGAAGCAGT
FD987070       <-- TTCGCAATTCATATTTGACCCCCAGAAAGTTTCGACAAGGAAGAAGCAGT
FD536038       <-- TTCGCAATTCATATTTGACCCCCAGAAAGTTTCGACAAGGAAAAAGCAGT
EY896641       --> ..................................................
FD531576       --> ..................................................
FD554973       --> ..................................................
FD554974       --> ..................................................
FD983184       --> ..................................................

               901    -    951
UN42006        --> AGTTGGTCGCTTTTCCGATGGAGGTAACTTTGATTTGGACAAAAGTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX747421       <-- ..................................................
FD559235       <-- AGTTGGTCGCTTTTCCGATGGAGGTAACTTTGATTTGGACAAAAGTTTCC
EY901294       <-- AGTTGGTCGCTTTTCCGATGGAGGTAACTTTGATTTcc............
FD559234       <-- AGTTGGTCGCTTTTCCGATGGAGGTAACTTTGATTTGGACAAAAGTTTCC
FD987070       <-- AGTTGGTCGCTTTTCCGATGGAGGTAACTTTGATTTGGACcc........
FD536038       <-- AGTTGGTCGCTTTTCCGATGGAGGTAACTTTGATTTGGACAAAAGTTTCC
EY896641       --> ..................................................
FD531576       --> ..................................................
FD554973       --> ..................................................
FD554974       --> ..................................................
FD983184       --> ..................................................

               951    -   1001
UN42006        --> ACCC
                   ~~~~
EX747421       <-- ....
FD559235       <-- ....
EY901294       <-- ....
FD559234       <-- ....
FD987070       <-- ....
FD536038       <-- ACCC
EY896641       --> ....
FD531576       --> ....
FD554973       --> ....
FD554974       --> ....
FD983184       --> ....