Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN44297

               1      -     51
UN44297        --> GTCGTCCCATGAAACAGAGATATCACTACAATGTTGCAGAAACAAGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- ..................................................
EW738509       <-- ..................................................
EW727388       <-- ..................................................
EY896352       <-- ..................................................
EW738838       <-- ..................................................
EW734886       --> GTCGTCCCATGAAACAGAGATATCACTACAATGTTGCAGAAACAAGACTG
EY900923       --> ..................................................
EW734508       --> ..................................................

               51     -    101
UN44297        --> AGCCAGCATGTACAGAAAGGGAATGAAGATGGTCTTCTGATTAGCTGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- ..................................................
EW738509       <-- ..................................................
EW727388       <-- ..................................................
EY896352       <-- ..................................................
EW738838       <-- ..................................................
EW734886       --> AGCCAGCATGTACAGAAAGGGAATGAAGATGGTCTTCTGATTAGCTGCGT
EY900923       --> ..................................................
EW734508       --> ..................................................

               101    -    151
UN44297        --> AGCATCAGCAGCGAATCTCTGGGCCCTTATTATGGATGCTGGAACTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- ..................................................
EW738509       <-- ..................................................
EW727388       <-- ..................................................
EY896352       <-- ..................................................
EW738838       <-- ..................................................
EW734886       --> AGCATCAGCAGCGAATCTCTGGGCCCTTATTATGGATGCTGGAACTGGAT
EY900923       --> ..................................................
EW734508       --> ..................................................

               151    -    201
UN44297        --> TTACCTCTCAAGTTTATGAATTGTCAAAGGTCTTCCTGCACAAGGACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- .......TCAAGTTTATGAATTGTCAAAGGTCTTCCTGCACAAGGACTGG
EW738509       <-- ..................................................
EW727388       <-- ..................................................
EY896352       <-- ..................................................
EW738838       <-- ..................................................
EW734886       --> TTACCTCTCAAGTTTATGAATTGTCAAAGGTCTTCCTACACAAGGACTGG
EY900923       --> ..................................................
EW734508       --> ..................................................

               201    -    251
UN44297        --> ATTATGGAACAATGGGAAAAGAACTACTATATAAGTTCCATAGCTGGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- ATTATGGAACAATGGGAAAAGAACTACTATATAAGTTCCATAGCTGGTGC
EW738509       <-- ..................................................
EW727388       <-- ..................................................
EY896352       <-- ..................................................
EW738838       <-- ..................................................
EW734886       --> ATTATGGAACAATGGGAAAAGAACTACTATATAAGTTCCATAGCTGGTGC
EY900923       --> ..................................................
EW734508       --> ..................................................

               251    -    301
UN44297        --> AGATAACGGGAGCTCTTTAGTTGTTATGTCAAAAGGAACATCTTATACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- AGATAACGGGAGCTCGTTAGTTGTTATGTCAAAAGGAACATCTTATACGC
EW738509       <-- ...TAACGGGAGCTCTTTAGTTGTTATGTCAAAAGGAACATCTTATACGC
EW727388       <-- ..................................................
EY896352       <-- ..................................................
EW738838       <-- ..................................................
EW734886       --> AGATAACGGGAGCTCTTTAGTTGTTATGTCAAAAGGAACATCTTATACGC
EY900923       --> ..................................................
EW734508       --> ..................................................

               301    -    351
UN44297        --> AGCAGTCATACAAAGTGAGCGACTCGTTCCCATTCAAGTGGATAAATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- AGCAGTCGTACAAAGTGAGCGACTCGTTTCCATTCAAGTGGATAAATAAG
EW738509       <-- AGCAGTCATACAAAGTGAGCGACTCGTTCCCATTCAAGTGGATAAATAAG
EW727388       <-- .....................................GTGGATAAATAAG
EY896352       <-- ..................................................
EW738838       <-- ..................................................
EW734886       --> AGCAGTCATACAAAGTGAGCGACTCGTTCCCATTCAAGTGGATAAATAAG
EY900923       --> .............................................gTAAG
EW734508       --> ..................................................

               351    -    401
UN44297        --> AAATGGAAAGAAGATTTTCATGTAACGTCGATGACAACTTCTGGTAACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- AAATGGAAAGAAGATTTTCATGTGACGTCCATGACAACTTCTGGTAACCG
EW738509       <-- AAATGGAAAGAAGATTTTCATGTAACGTCGATGACAACTTCTGGTAACCG
EW727388       <-- AAATGGAAAGAAGATTTTCATGTGACGTCCATGACAACTTCTGGTAACCG
EY896352       <-- ........AGAAGATTTTCATGTAACGTCGATGACAACTTCTGGTAACCG
EW738838       <-- ...............................................gCG
EW734886       --> AAATGGAAAGAAGATTTTCATGTAACGTCGATGACAACTTCTGGTAACCG
EY900923       --> AAATGGAAAGAAGATTTTCATGTAACGTCGATGACAACTTCTGGTAACCG
EW734508       --> ...............................................gCG

               401    -    451
UN44297        --> TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTCTCTGATCAGGTGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTTTCTGATCAGGTGGTGG
EW738509       <-- TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTCTCTGATCAGGTGGTGG
EW727388       <-- TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTCTCTGATCAGGTGGTGG
EY896352       <-- TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTCTCTGATCAGGTGGTGG
EW738838       <-- TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTCTCTGATCAGGTGGTGG
EW734886       --> TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTCTCTGATCAGGTGGTGG
EY900923       --> TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTCTCTGATCAGGTGGTGG
EW734508       --> TTGGGGTGTGGTGATGTCGAGGAACGCTGGCTTCTCTGATCAGGTGGTGG

               451    -    501
UN44297        --> AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC
EW738509       <-- AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC
EW727388       <-- AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC
EY896352       <-- AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC
EW738838       <-- AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC
EW734886       --> AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC
EY900923       --> AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC
EW734508       --> AGCTTGATTTTTTGTACCCGAGCGATGGAATACATAGGAGGTGGGAGAGC

               501    -    551
UN44297        --> GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT
EW738509       <-- GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT
EW727388       <-- GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT
EY896352       <-- GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT
EW738838       <-- GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT
EW734886       --> GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT
EY900923       --> GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT
EW734508       --> GGGTACAGAATCACATCGATGGCGGCAACTGCGGATCAAGCGGCTTTCGT

               551    -    601
UN44297        --> GTTAAGCATACCGAAACGTAAAATGATGGACGAAACTCAGGAGACTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- GTTAAGCATACCGAAACGTAAAATGATGGACGAAACTCAGGAGACTTTTC
EW738509       <-- GTTAAGCATACCGAAACGTAAAATGATGGACGAAACTCAGGAGACTCTTC
EW727388       <-- GTTAAGCATACCGAAACGTAAAATGATGGACGAAACTCAGGAGACTCTTC
EY896352       <-- GTTAAGCATACCGAAACGTAAAATGATGGACGAAACTCAGGAGACTCTTC
EW738838       <-- GTTAAGCATACCGAAACGTAAAATGATGGACGAAACTCAGGAGACTCTTC
EW734886       --> GTTAAGCATACCGAAACGTAAAATGATGGACGAAAC..............
EY900923       --> GTTAAGCATACCGAAACGTAAAATGATGGACGAAACTCAGGAGACTCTTC
EW734508       --> GTTAAGCATACCGAAACGTAAAATGATGGACGAAACTCAGGAGACTCTTC

               601    -    651
UN44297        --> GTACCACCGCCTTTCCAAGTACTCATGTCAAGGAAAAATGGGCGAAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- GTACCACCGCCTTTCCAAGTACTCATGTCAAGGAAAAATGGGCGAAGAAT
EW738509       <-- GTACCACCGCCTTTCCAAGTACTCATGTCAAGGAAAAATGGGCGAAGAAT
EW727388       <-- GTACCACCGCCTTTCCAAGTACTCATGTCAAGGAAAAATGGGCGAAGAAT
EY896352       <-- GTACCACCGCCTTTCCAAGTACTCATGTCAAGGAAAAATGGGCGAAGAAT
EW738838       <-- GTACCACCGCCTTTCCAAGTACTCATGTCAAGGAAAAATGGGCGAAGAAT
EW734886       --> ..................................................
EY900923       --> GTACCACCGCCTTTCCAAGTACTCATGTCAAGGAAAAATGGGCGAAGAAT
EW734508       --> GTACCACCGCCTTTCCAAGTACTCATGTCAAGGAAAAATGGGCGAAGAAT

               651    -    701
UN44297        --> CTGTACATTGCATCGGTATGCTATGGGAGGACAGTGTGCTGATGTGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- CTGTACATTGCATCGGTATGCTATGGGAGGACAGTGTGCTGATGTGACAC
EW738509       <-- CTGTACATTGCATCGGTATGCTATGGGAGGACAGTGTGCTGATGTGACAC
EW727388       <-- CTGTACATTGCATCGGTATGCTATGGGAGGACAGTGTGCTGATGTGACAC
EY896352       <-- CTGTACATTGCATCGGTATGCTATGGGAGGACAGTGTGCTGATGTGACAC
EW738838       <-- CTGTACATTGCATCGGTATGCTATGGGAGGACAGTGTGCTGATGTGACAC
EW734886       --> ..................................................
EY900923       --> CTGTACATTGCATCGGTATGCTATGGGAGGACAGTGTGCTGATGTGACAC
EW734508       --> CTGTACATTGCATCGGTATGCTATGGGAGGACAGTGTGCTGATGTGACAC

               701    -    751
UN44297        --> TAAGCATCTTATGTTCTGTTAGAAAGAGCCAAGGAGAATTGGATCTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- TAAGCATCTTATGTTCTGTTAGAAAGAGCCAAGGAGAATTGGATCTGCTT  Raphanus sativus cv Early Scarlet Globe
EW738509       <-- TAAGCATCTTATGTTCTGTTAGAAAGGGCCAAGGCGAATTGGATCTGCTT  Raphanus sativus cv Rat-Tail Radish #3870
EW727388       <-- TAAGCATCTTATGTTCTGTTAGAAAGAGCCAAGGAGAATTGGATCTGCTT  Raphanus sativus cv Early Scarlet Globe
EY896352       <-- TAAGCATCTTATGTTCTGTTAGAAAGGGCCAAGGAGAATTGG-TTTTCTT  Raphanus raphanistrum subsp. maritimus
EW738838       <-- TAAGCATCTTATGTTCTGTTAGAAAGAGCCAAGGAGAATTGGATCTGCTT  Raphanus sativus cv Rat-Tail Radish #3870
EW734886       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY900923       --> TAAGCATCTTATGTTCTGTTAGAAAGGGCCAAGGAGAATTGGTTCT-CTT  Raphanus raphanistrum subsp. maritimus
EW734508       --> TAAGCATCTTATGTTCTGTTAGAAAGAGCCAAGGAGAATTGGATCTGCTT  Raphanus sativus cv Rat-Tail Radish #3870

               751    -    801
UN44297        --> AAGGGTAGGTCGTGTCATAATACCACCAATCAAAAGAGGTAAAACCAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- AAGGGTAGGTCGTGTCATAATACCACCAATCAAAAGAGGTAAAACCAGAC
EW738509       <-- AAGGGTAGGTCGTGTCATAATACCACCAATCAAAAGAGGTAAAACCAGAC
EW727388       <-- AAGGGTAGGTCGTGTCATAATACCACCAATCAAAAGAGGTAAAACCAGAC
EY896352       <-- AAGGGTAGGTCGTGTCATAATACCACCAATCAAAAGAGGTAAAACCAGAC
EW738838       <-- AAGGGTAGGTCGTGTCATAATACCACCAATCAAAAGAGGTAAAGCCAGAC
EW734886       --> ..................................................
EY900923       --> AAGGGTAGGTCGTGTCATAATACCACCAATCAAAAGAGGTAAAACCAGAC
EW734508       --> AAGGGTAGGTCGTGTCATAATACCACCAATCAAAAGAGGTAAAGCCAGAC

               801    -    851
UN44297        --> GCAGCCTGTTTTGGCTGGTTAAATGTAATGAAAATAGATGTGTCTTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- GCAGCCTGTTTTGGCTGGTTAAATGTAATGAAAATAGATGTGTCTTTGGT
EW738509       <-- GCAGCCTGTTTTGGCTGGTTAAATGTAATGAAAATAGATGTGTCTTTGGT
EW727388       <-- GCACCCTGTTTTGGCTGGTTAAATGTAATGAAAATAGATGTGTCTTTGGT
EY896352       <-- GCAGCCTGTTTTGGCTGGTTAAATGTAATGAAAATAGATGTGTCTTTGGT
EW738838       <-- GCAGCCTGTTTTGGCTGGTTAAATGTAATGAAAATAGATGTGTCTTTGGT
EW734886       --> ..................................................
EY900923       --> GCAGCCTGTTTTGGCTGGTTAAATGTAATGAAAATAGATGTGTCTTTGGT
EW734508       --> GCAGCCTGTTTTGGCTGGTTAAATGTAATGAAAATAGATGTGTCTTTGGT

               851    -    901
UN44297        --> AATGTTGTAACAAGTTACAAAAGAGAAGATGGAGTTAGTAATAGAGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- AATGTTGTAACAAGTTACAAAAGAGAAGATGGAGTTAGTAATAGAGAAAA
EW738509       <-- AATGTTGTAACAAGTTACAAAAGAGAAGATGGAGTTAGTAATAGAGAAAA
EW727388       <-- AATGTTGTAACAAGTTACAAAAGAGAAGATGGAGTTAGTAATAGAG....
EY896352       <-- AATGTTGTAACAAGTTACAAAAGAGAAGATGGAGTTAGTAATAGAGAAAA
EW738838       <-- AATGTTGTAACAAGTTACAAAAGAGAAGATGGAGTTAGTAATAGAGAAAA
EW734886       --> ..................................................
EY900923       --> AATGTTGTAACAAGTTACAAAAGAGAAGATGGAGTTAGTAATAGAGAAAA
EW734508       --> AATGTTGTAACAAGTTACAAAAGAGAAGATGGAGTTAGTAATAGAGAAAA

               901    -    951
UN44297        --> AGATTTGAGGGCTTGTTGAAGCCTTCCAAGTGTGTGTGCTTATTTTATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- AGATTTGAGGGCTTGTTGAAGCCTTCCAAGTGTGTGTGCTTATTTTATCC
EW738509       <-- AGATTTGAGGGCTTGTTGAAGCCTTCCAAGTGTGTGTGCTTATTTTATCC
EW727388       <-- ..................................................
EY896352       <-- AGATTTGAGGGCTTGTTGAAGCCTTCCAAGTGTGTGTGCTTATTTTATCC
EW738838       <-- AGATTTGAGGGCTTGTTGAAGCCTTCCAAGTGTGTGTGCTTATTTTATCC
EW734886       --> ..................................................
EY900923       --> AGATTTGAGGGCTTGTTGAAGCCTTCCAAGTGTGTGTGCTTATTTTATCC
EW734508       --> AGATTTGAGGGCTTGTTGAAGCCTTCCAAGTGTGTGTGCTTATTTTATCC

               951    -   1001
UN44297        --> ACTTCCTGTTTTGTTTTTAAAATCTGTCAGACAAGGTGAAATAATGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- ACTTCCTGTTTTGTTTTTAAAATCTGTCAGACAAGGTGAAATAATG....
EW738509       <-- ACTTCCTGTTTTGTTTTTAAAATCTGTCAGACAAGGTGAAATAATGTGAG
EW727388       <-- ..................................................
EY896352       <-- ACTTCCTGTTTTGTTTTTAAAATCTGTCAGACAAGGTGAAATAATGTGAG
EW738838       <-- ACTTCCTGTTTTGTTTTTAAAATCTGTCAGACAAGGTGAAATAATGTGAG
EW734886       --> ..................................................
EY900923       --> ACTTCCTGTTTTGTTTTTAAAATCTGTCAGACAAG-TGAAATAATGTGAG
EW734508       --> ACTTCCTGTTTTGTTTTTAAAATCTGTCAGACAAGGTGAAATAATGTGAG

               1001   -   1051
UN44297        --> AAACCCAAACTAAAACTTCACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EW727090       <-- .........................
EW738509       <-- AAACCCAAACTAAAACTTCACC...
EW727388       <-- .........................
EY896352       <-- AAACCCAAACTAAAACTTCACC...
EW738838       <-- AAACCCAAACTAAAACTTCACCAAT
EW734886       --> .........................
EY900923       --> AAACCCAAACTAAAACTTCACCA..
EW734508       --> AAACCCAAACTAAAACTTCACCAAT