Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN45419

               1      -     51
UN45419        --> ATGATTCTGGTTTACGTCGTTTACAGTAATCGAAATACACTTGTGCTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ..................................................
FD972773       <-- ..................................................
FD531502       --> ATGATTCTGGTTTACGTCGTTTACAGTAATCGAAATACACTTGTGCTGTT
FD530670       --> ............................................aCTGTT
EX908093       --> ..................................................
FD968595       --> ..................................................
EY944794       --> ..................................................
EV542022       --> ..................................................

               51     -    101
UN45419        --> CAAAATTTATTTTTCAAAACATATATCATCCTCGATTCAAACATTGCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ..................................................
FD972773       <-- ..................................................
FD531502       --> CAAAATTTATTTTTCAAAACATATATCATCCTCGATTCAAACATTGCATA
FD530670       --> CAAAATTTATTTTTCAAAACATATATCATCCTCGATTCAAACATTGCATA
EX908093       --> CAAAATTTATTTTTCAAAACATATATCATCCTCGATTCAAACATTGCATA
FD968595       --> ..............CAAAACATATATCATCCTCGATTCAAACATTGCATA
EY944794       --> ......................................AAACATTGCATA
EV542022       --> ...............................................ATA

               101    -    151
UN45419        --> TTTGCATATACATACACAAAAATGATTATAATTGCCTCATCGGATTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ..................................................
FD972773       <-- ..................................................
FD531502       --> TTTGCATATACATACACAAAAATGATTATAATTGCCTCATCGGATTGAAT
FD530670       --> TTTGCATATACATACACAAAAATGATTATAATTGCCTCATCGGATTGAAT
EX908093       --> TTTGCATATACATACACAAAAATGATTATAATTGCCTCATCGGATTGAAT
FD968595       --> TTTGCATATACATACACAAAAATGATTATAACTGCCTCATCGGATTGAAT
EY944794       --> TTTGCATATACATACACAAAAATGATTATAATTGCCTCATCGGATTGAAT
EV542022       --> TTTGCATATACATACACAAAAATGATTATAACTGGCTCATCGGATTGAAT

               151    -    201
UN45419        --> TCTGGATCCGATTTAAGTAGGTGTAGACACGGTTCACGCCCGGTTCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ............TTAAGTAGGTGTAGACACGGTTCACGCCCGGTTCATGT
FD972773       <-- ..................................................
FD531502       --> TCTGGATCCGATTTAAGTAGGTGTAGACACGGTTCACGCCCGGTTCATGT
FD530670       --> TCTGGATCCGATTTAAGTAGGTGTAGACACGGTTCACGCCCGGTTCATGT
EX908093       --> TCTGGATCCGATTTAAGTAGGTGTAGACACGGTTCACGCCCGGTTCATGT
FD968595       --> TCTGGATCCGATTTAAGTAGGTGTAAACACGGTTCACGCCCGGTTCATGT
EY944794       --> TCTGGATCCGATTTAAGTAGGTGTAGACACGGTTCACGCCCGGTTCATGT
EV542022       --> TCTGGAACCGATTTAAGTAGGGGTAGACACGGTTCACGCCCGGTTCATGT

               201    -    251
UN45419        --> ACATACCGGTTCTAGTATCCACCAAAATTTCTTCGCCAATGTTAACAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ACATACCGGTTCTAGTATCCACCAAAATTTCTTCGCCAATGTTAACAAAG
FD972773       <-- ..................................................
FD531502       --> ACATACCGGTTCTAGTATCCACCAAAATTTCTTCGCCAATGTTAACAAAG
FD530670       --> ACATACCGGTTCTAGTATCCACCAAAATTTCTTCGCCAATGTTAACAAAG
EX908093       --> ACATACCGGTTCTAGTATCCACCAAAATTTCTTCGCCAATGTTAACAAAG
FD968595       --> ACATACCGGTTCTAGTATCCACCAAAATTTCTTCCCCAATGTTAACAAAG
EY944794       --> ACATACCGGTTCTAGTATCCACCAAAATTTCTTCGCCAATGTTAACAAAG
EV542022       --> ACATACCGGTTCTAGTATCCACCAAAATTTCTTCGCCAATGTTAACAAAG

               251    -    301
UN45419        --> AGTGGTACGGTAACTACTGCCCCTGTTTCCACTGTAGCCGGCTTTGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- AGTGGTACGGTAACTACTGCCCCTGTTTCCACTGTAGCCGGCTTTGATCC
FD972773       <-- ..................................................
FD531502       --> AGTGGTACGGTAACTACTGCCCCCGTTTCCACTGTAGCCGGCTTTGATCC
FD530670       --> AGCGGTACGGTAACTACTGCCCCTGTTTCCACTGTTGCAGGCTTTGATCC
EX908093       --> AGTGGTACGGTAACTACTGCCCCCGTTTCCACTGTAGCCGGCTTTGATCC
FD968595       --> AGTGGTACGGTAACTACTGCCCCTGTTTCCACTGTAGCCGGCTTTGATCC
EY944794       --> AGTGGTACGGTAACTACTGCCCCCGTTTCCACTGTAGCCGGCTTTGATCC
EV542022       --> AGTGGTACGGTAACTACTGCCCCTGTTTCCACTGTAGCCGGCTTTGATCC

               301    -    351
UN45419        --> ACCTTGTGCAGTGTCACCGCGAAGACCAGGATCAACATCAACCACTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ACCTTGTGCAGTGTCACCGCGTAGACCAGGATCAACATCAACCACTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972773       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531502       --> ACCTTGTGCAGTGTCACCGCGAAGACCAGGATCAACATCAACCACTTTGA  Raphanus raphanistrum subsp. maritimus
FD530670       --> ACCTTGTGCAGTGTCACCGCGAAGACCAGGATCAACATCAACCACTTTGA  Raphanus raphanistrum subsp. maritimus
EX908093       --> ACCTTGTGCAGTGTCACCGCGAAGACCAGGATCAACATCAACCACTTTGA  Raphanus sativus cv Rat-Tail Radish #3870
FD968595       --> ACCTTGTGCAGTGTCACCGCGTAAACCAGGATCAACATCAACCACTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944794       --> ACCTTGTGCAGTGTCACCGCGAAGAACAGGATCAACATCAACCACTTTGA  Raphanus sativus cv Rat-Tail Radish #3870
EV542022       --> ACCTTGTGCAGTGTCACCGCGTAGACCAGGATCAACATCAACCACTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN45419        --> GCGTAACCGTATTTGGTAGTTCGAAATCGATAACCTTGTCTTTCCAGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- GCGTAACCGTATTTGGTAGTTCGAAATCGATAACCTTGTCTTTCCAGTAC
FD972773       <-- ...........TTTGGTAGTTCGAAATCGATAACTTTGTCTTTCCAGTAC
FD531502       --> GGGTAACAGTATTAGGTAGTTCGAAATCGATAACCTTGTCTTTCCAGTAA
FD530670       --> GCGTAACCGTATTTGGTAGTTCGAAATCGATAACCTTGTCTTTCCAGTAC
EX908093       --> GGGTAACCGTATTAGGTAGTTCGAAATCGATAACCTTGTCTTTCCAGTAA
FD968595       --> GCGTAACCGTATTTGGTAGTTCGAAATCGATAACCTTGTCTTTCCAGTAC
EY944794       --> GGGTAACCGTATTAGGTAGTTCGAAATCGATAACCTTGTCTTTCCAGTAA
EV542022       --> GCGTAACCGTATTTGGTAGTTCGAAATCGATAACCTTGTCTTTCCAGTAC

               401    -    451
UN45419        --> AGCAAACTGCATTCCATTCCTTCTTTCAGCCATCTCGTCTTGTCGCCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- AGCAAACTGCATTCCATTCCTTCTTTCAGCCATCTCGTCTTGTCGCCCAT
FD972773       <-- AGCAAACTGCATTCCATTCCTTCTTTCAGCCATCTCGTCTTGTCGCCCAT
FD531502       --> AGCAAACTACATTCTATTCCTTCTTTCAGCCATCTCGTCTTGTCGCCCAT
FD530670       --> AGCAAACTGCATTCCATTCCTTCTTTCAGCCATCTCGTCTTGTCGCCCAT
EX908093       --> AGCAAACTACATTCCATTCCTTCTTTCAGCCATCTCGTCTTGTCGCCCAT
FD968595       --> AGCAAACTG.........................................
EY944794       --> AGCAAACTACATTCCATTCCTTCTTTCAGCCATCTCGTCTTGTCGCCCAT
EV542022       --> AGCAAACTGCATTCCATTCCTTCTTTCAGCCATCTCGTCTTGTCGCCCAT

               451    -    501
UN45419        --> ATCGGATTCGTTGAGACGTGTTTCTTCGTATGTGCTCAAATCCATGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ATCGGATTCGTTGAGACGTGTTTCTTCGTATGTGCTCAAATCCATGAAAA
FD972773       <-- ATCGGATTCGTTGAGACGTGTTTCTTCGTATGTGCTCAAATCCATGAAAA
FD531502       --> ATCGGATTCGTTGAGACGTGTTTCTTCGTATGTGCTCAAATCCATGAAAA
FD530670       --> ATCGGATTCGTTGAGACGTGTTTCTTCGTATGTGCTCAAATCCATGAAAA
EX908093       --> ATCGGATTCGTTGAGACGTGTTTCTTCGTATGTGCTCAAATCCATGAAAA
FD968595       --> ..................................................
EY944794       --> ATCGGATTCGTTGAGGCGTGTTTCTTCGTATGTGCTCAAATCCATGAAAA
EV542022       --> ATCGGATTCGTTGAGACGTGTTTCTTCGTATGTGCTCAAATCCATGAAAA

               501    -    551
UN45419        --> CAAACTGAGACCCGTCTTTGTATGTGAACTGTTTGGTTTCTTTGAATACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- CAAACTGAGACCCGTCTTTGTATGTGAACTGTTTGGTTTCTTTGAATACG
FD972773       <-- CAAACTGAGACCCGTCTTTGTATGTGAACTGTGTGGTTTCTTTGAATACG
FD531502       --> CAAACTGAGACCCGTCTTTGTATGTGAACTGTTTGGTTTCTTTGAATACG
FD530670       --> CAAACTGAGACCCGTCTTTGTATGTGAACTGTTTGGTTTCTTTGAATACA
EX908093       --> CAAACTGAGACCCGTCTTTGTATGTGAACTGTTTGGTTTCTTTGAATACG
FD968595       --> ..................................................
EY944794       --> CAAACTGAGACCCGTCTTTGTATGTGAACTGTTTGGTTTCTTTGAATACG
EV542022       --> CAAACTGAGACCCGTCTTTGTATGTGAACTGTTTGGTTTCTTTGAATACG

               551    -    601
UN45419        --> TTTGCTTCCTCGACAGAGATTCCAGCACGAAATGTTCTCTCCACTGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- TTTGCTTCCTCGACAGAGATTCCAGCACGAAATGTTCTCTCCACTGTGCT
FD972773       <-- TTTGCTTCCTCGACAGAGATTCCAGCACGAAATGTTCTCTCCACTGTGCT
FD531502       --> TTTGCTTCCTCGACAGAGATTCCAGCACGAAATGTTCTCTCCACTGTGCT
FD530670       --> TTTGCTTCCTCGACAGAGATTCCAGCACGAAATGTTCTCTCCACTGTGCT
EX908093       --> TTTGCTTCCTCGACAGAGATTCCAGCACGAAATGTTCTCTCCACTGTGCT
FD968595       --> ..................................................
EY944794       --> TTTGCTTCCTCGACAGAGATTCCAGCACGAAATGTTCTCTCCACTGTGCT
EV542022       --> TTTGCTTCCTCGACAGAGATTCCAGCACGAAATGTTCTCTCCACTGTGCT

               601    -    651
UN45419        --> ACCATTAACATAGTTCCTGATCTTAGTTCTCACAAAGGCCGCACCTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ACCATTAACATAGTTCCTGATCTTAGTTCTCACAAAGGCCGCACCTTTTC
FD972773       <-- ACCATTAACATAGTTCCTGATCTTAGTTCTCACAAAGGCCGCACCTTTTC
FD531502       --> ACCATTAACATAGTTCCTGATC............................
FD530670       --> ACCATTAACATAGTTCCTGATCTTAGTTCTCACAAAGGCCGCACCTTTTC
EX908093       --> ACCATTAACATAGTTCCTGATCTTAGTTCTCACAAAGGCCGCTCCTTTTC
FD968595       --> ..................................................
EY944794       --> ACCATTAACATAGTTCCa................................
EV542022       --> ACCATTAACATAGTTCCTGATCTTAGTTCTCACAAAGGCCGCACCTTTTC

               651    -    701
UN45419        --> CTGGCTTGACATGAAGAAACTCCAGAACACGCCAAGGAGCACCATCGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- CTGGCTTGACATGAAGAAACTCCAGAACACGCCAAGGAGCACCATCGACT
FD972773       <-- CTGGCTTGACATGAAGAAACTCCAGAACACGCCAAGGAGCACCATCGACT
FD531502       --> ..................................................
FD530670       --> CTGGTTTGACATGA....................................
EX908093       --> CTGGCTTGACATGAAGAAACTCaagtac......................
FD968595       --> ..................................................
EY944794       --> ..................................................
EV542022       --> CTGGCTTGACATGAAGAAACTCCAGAACACGCCAAGGAGCACCATCGACT

               701    -    751
UN45419        --> TCAATATTGGTTCCGGCTTTGATGTCATTGGCAGACAAAGAGCAGCAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- TCAATATTGGTTCCGGCTTTGATGTCATTGGCAGACAAAGAGCAGCAAAT
FD972773       <-- TCAATATTGGTTCCGGCTTTGATGTCATTGGCAGACAAAGAGCAGCAAAT
FD531502       --> ..................................................
FD530670       --> ..................................................
EX908093       --> ..................................................
FD968595       --> ..................................................
EY944794       --> ..................................................
EV542022       --> TCAATATTGGTTCCGGCTTTGATGTCATTGGCAGACAAAGAGCAGCAAAT

               751    -    801
UN45419        --> CCCTGGAAATCTACTGGTTCGAGG-AGAGATCCTCACAGAGAGCACCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- CCCTGGAAATCTACTGGTTCGAGG-AGAGATCCTCACAGAGAGCACCGAT
FD972773       <-- CCCTGGAAATCTACTGGTTCGAGG-AGAGATCCTCACAGAGAGCACCGAT
FD531502       --> ..................................................
FD530670       --> ..................................................
EX908093       --> ..................................................
FD968595       --> ..................................................
EY944794       --> ..................................................
EV542022       --> CCCTGGAAATCTACTGGTTCGAGGGAGAGATCCTCACAGAGAGCACCGAT

               801    -    851
UN45419        --> CGTCTCGAGAAAGATAGTGAGAGCGAAGTTGTTGCATACGGGATGCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- CGTCTCGAGAAAGATAGTGAGAGCGAAGTTGTTGC...............
FD972773       <-- CGTCTCGAGAAAGATAGTGAGAGCGAAGTTGTTGAATACGGGATGCAGAG
FD531502       --> ..................................................
FD530670       --> ..................................................
EX908093       --> ..................................................
FD968595       --> ..................................................
EY944794       --> ..................................................
EV542022       --> CGTCTCGAGAAAGATAGTGAGAGCGAAGTTGTTGC...............

               851    -    901
UN45419        --> TGAAGGAGACGAAGATACAGAGAAAGCAACTCTTCCCGCCATTGTTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ..................................................
FD972773       <-- TGAAGGAGACGAAGATACAGAGAAAGCAACTCTTCCCGCCATTGTTTTTC
FD531502       --> ..................................................
FD530670       --> ..................................................
EX908093       --> ..................................................
FD968595       --> ..................................................
EY944794       --> ..................................................
EV542022       --> ..................................................

               901    -    951
UN45419        --> TCCCGCCGGCGAGAAGATAAAAGCAGGGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV537878       <-- ................................
FD972773       <-- TCCCGCCGGCGAGAAGATAAAAGCAGGGGAGC
FD531502       --> ................................
FD530670       --> ................................
EX908093       --> ................................
FD968595       --> ................................
EY944794       --> ................................
EV542022       --> ................................