RadishBase

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Alignment for radish unigene UN46945

               1      -     51
UN46945        --> GGATTTTCATCTTCTCTAATATCTCCAAGTCACACTTCTGCAAGATAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- GGATTTTCATCTTCTCTAATATCTCCAAGTCACACTTTTGCAAGATAGTG
EW727850       <-- GGATTTTCATCTTCTCTAATATCTCCAAGTCACACTTCTGCAAGATAGTG
EV567520       --> GGATTTTCATCTTCTCTAATATCTCCAAGTCACACTTCTGCAAGATAGTG
EY930805       --> GGATTTTCATCTTCTCTAATATCTCCAAGTCACACTTCTGCAAGATAGTG
FD963358       --> GGATTTTCATCTTCTCTAATATCTCCAAGTCACACTTCTGCAAGATAGTG
FD947579       --> ..tTTTTCATCTTCTCTAATATCTCCAAGTCACACTTCTGCAAGATAGTG
FD536452       --> ..................................................
EW723607       --> ..................................................

               51     -    101
UN46945        --> GTAAGGATGAGATTGGGTAAGATTGTGGAAGGCTTGAAGTTGAAAATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- GTAAGGATGAGATTGGGTAAGATTGTGGAAGGCTTGAAGTTGAAAATAAA
EW727850       <-- GTAAGGATGAGATTGGGTAAGATTGTGGAAGGCTTGAAGTTGAAAATAAA
EV567520       --> GTAAGGATGAGATTGGGTAAGATTGTGGAAGGCTTGAAGTTGAAAATAAA
EY930805       --> GTAAGGATGAGATTGGGTAAGATTGTGGAAGGCTTGAAGTTGAAAATAAA
FD963358       --> GTAAGAATGAGATTGGGTAAGATTGTGGAAGGCTTGAAGTTGAAAATAAA
FD947579       --> GTAAGGATGAGATTGGGTAAGATTGTGGAAGGCTTGAAGTTGAAAATAAA
FD536452       --> .......................................TTGAAAATAAA
EW723607       --> ..................................................

               101    -    151
UN46945        --> GACAAGTCTAAGGATGAGGAAGAGATCATCATTAGCGTCTTCATCGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- GACAAGTCTAAGGATGAGGAAGAGATCATCATTAGCGTCTTCATCGTCTT
EW727850       <-- GACAAGTCTAAGGATGAGGAAGAGATCATCATTAGCGTCTTCATCGTCTT
EV567520       --> GACAAGTCTAAGGATGAGGAAGAGATCATCATTAGCGTCTTCATCGTCTT
EY930805       --> GACAAGTCTAAGGATGAGGAAGAGATCATCATTAGCGTCTTCATCGTCTT
FD963358       --> GACAAGTCTAAGGATGAGGAAGATATCATCATTAGCGTCTTCATCGTCTT
FD947579       --> GACAAGTCTAAGGATGAGGGAGAGATCATCATTAGCGTCTTCATCGTCTT
FD536452       --> GACAAGTCTAAGGATGAGGAAGAGATCATCATTAGCGTCTTCATCGTCTT
EW723607       --> ...........................ATCATTAGCGTCTTCATCGTCTT

               151    -    201
UN46945        --> CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA
EW727850       <-- CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA
EV567520       --> CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA
EY930805       --> CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA
FD963358       --> CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA
FD947579       --> CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA
FD536452       --> CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA
EW723607       --> CATCGTCATCCTCATCCTATGAGAAGATAGAGAAGAGTGACAGTATGAGA

               201    -    251
UN46945        --> TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA
EW727850       <-- TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA
EV567520       --> TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA
EY930805       --> TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA
FD963358       --> TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA
FD947579       --> TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA
FD536452       --> TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA
EW723607       --> TTTGAGTTAAGAAGCAGAAAGGCACACAAAATTATCCAGCAAACTCTTCA

               251    -    301
UN46945        --> AATTGCCGACTCTCCGACCTCAAGAACTTATGCTTTCTGATGCCATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- AATTGCCGACTCTCCGACCTCAAGAACTTATGCTTTCTGATGCCATCTTT
EW727850       <-- AATTGCCGACTCTCCGACCTCAAGAACTTATGCTTTCTGATGCCATCTTT
EV567520       --> AATTGCCGACTCTCCGACCTCAAGAACTTATGCTTTCTGATGCCATCTTT
EY930805       --> AATTGCCGACTCTCCGACCTCTAGAACTTATGCTTTCTGATACCATCTTT
FD963358       --> AATTGCCGACTCTCCGACCTCAAGAACATATGCTTTCTGATGCCATCTTT
FD947579       --> AATTGCCGACTCTCCGACCTCAAGAACTTATGCTTTCTGATGCCATCTTT
FD536452       --> AATTGCCGACTCTCCGACCTCAAGAACATATGCTTTCTGATGCCATCTTT
EW723607       --> AATTGCCGACTCTCCGACCTCAAGAACTTATGCTTTCTGATGCCATCTTT

               301    -    351
UN46945        --> TACCATCCAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- TACCATCCAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC
EW727850       <-- TACCATCCAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC
EV567520       --> TACCATCCAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC
EY930805       --> TACCATCCAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC
FD963358       --> TACCATCTAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC
FD947579       --> TACCATCCAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC
FD536452       --> TACCATCCAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC
EW723607       --> TACCATCCAAAACATATTCATACATACATATGGGCTTGCGTGTACACATC

               351    -    401
UN46945        --> TGTTTATACATATCTAAAATATTGTACGTGTATGTATGTGTGAAAG-GTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- TGTTTATACATATCTAATATATTGTACGTGTATGTATGTGcg........
EW727850       <-- TGTTTATACATATCTAAAATATTGTACGTGTATGTATGTGTGAAAG-GTT
EV567520       --> TGTTTATACATATCTAATATATTGTACGTGTATGTATGTGcg........
EY930805       --> TGTTTATACATATCTAAAATATTGTACGTGTATGTATGTGTGAAAG-GTT
FD963358       --> TGTTTATACATATCTAAAATATTGTACGTGTATGTATGTGTGAAAG-GTT
FD947579       --> TGTTTATACATATCTAAAATATTGTACGTGTATGTATGTGTGAAAG-GTT
FD536452       --> TGTTTATACATATCTAAAATATTGTACGTGTATGTATGTGTGAAAGAGTT
EW723607       --> TGTTTATACATATCTAAAATATTGTACGTGTATGTATGTGTGAAAG-GTT

               401    -    451
UN46945        --> ATATATGGATGATGTAATGTGATGGATCTCATCTTGGCTAATGGATGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW727850       <-- ATATATGGATGATGTAATGTGA............................  Raphanus sativus cv Early Scarlet Globe
EV567520       --> ..................................................  Raphanus raphanistrum subsp. landra
EY930805       --> ATATATGGATGAT-TAATGTGATGGATCTCATCTTGGCTAATGGATGATT  Raphanus sativus var. oleiformis
FD963358       --> ATATATGGATGAT-TAATGTGATGGATCTCATCTTGGCTAATGGATGATT  Raphanus raphanistrum subsp. maritimus
FD947579       --> ATATATGGATGATGTAATGTGATGGATCTCATCTTGGCTAATGGATGATT  Raphanus sativus cv Early Scarlet Globe
FD536452       --> ATATATGGATGAT-TAATGTGATGGATCTC....................  Raphanus raphanistrum subsp. maritimus
EW723607       --> ATATATGGATGATGTAATGTGATGGATCTCATCTTGGCTAGTGGATGATT  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN46945        --> ATTAGGTGAGTTCAACATTAATGGTCATTAATAATTCTCTTCACTAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572446       <-- ..................................................
EW727850       <-- ..................................................
EV567520       --> ..................................................
EY930805       --> ATTAGGTGAGTTCAACATTAATGGTCATTAATAATTCTCTTCg.......
FD963358       --> ATTAGGTGAGTTCAACATTAATGGTCATTAATAATTCTCTTCACTAATCT
FD947579       --> ATTAGGTGAGTTCAACATTAATGGTCATTAATAATTCTCTcc........
FD536452       --> ..................................................
EW723607       --> ATTAGGTGAGTcc.....................................

               501    -    551
UN46945        --> TTGCTTT
                   ~~~~~~~
EV572446       <-- .......
EW727850       <-- .......
EV567520       --> .......
EY930805       --> .......
FD963358       --> TTGCTTT
FD947579       --> .......
FD536452       --> .......
EW723607       --> .......