Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN47531

               1      -     51
UN47531        --> GGGTCTCTGCTTTCGAGGAATTAGGGTTTTGAAGCAAAATCACGAATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- ..................................................
EY927486       <-- ..................................................
FD942267       <-- ..................................................
FD529195       <-- ..................................................
EX748937       --> GGGTCTCTGCTTTC-AGGAATTAGGGTTCTGAAGCAAAATCACGA-TTAC
FD946075       --> GGGTCTCCGCTTTCGAGGAATTAGGGTTTTGAAGCAAAATCACGAATCAG
EY931563       --> ............................TTGAAGCAAAATCACGAATCAG
EX765897       --> .................................................G

               51     -    101
UN47531        --> AATCTCATCTTCGCCGCTCTCTCACTGACTGACAAAAATTTTGGCAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- ..................................................
EY927486       <-- ..................................................
FD942267       <-- ..................................................
FD529195       <-- ..................................................
EX748937       --> AATCTCATCTTCGCCGCTCTCTCACTGACTGACAAAAATTTTGGCAGTTG
FD946075       --> AATCTCATCTTCGCCGCTCTCTCACTGACTGACAAAAATTTTGGCAGTTG
EY931563       --> AATCTCATCTTCGCCGCTCTCTCACTGACTGACAAAAATTTTGGCAGTTG
EX765897       --> AATCTCATCTTCGCCGCTCTCTCACTGACTGACAAAAATTTTGGCAGTTG

               101    -    151
UN47531        --> GTAGAAGATATGTCGGAAGAAGTGGAGTACCGGTGCTTCATTGGTGGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- ..................................................
EY927486       <-- ..................................................
FD942267       <-- ..................................................
FD529195       <-- ..................................................
EX748937       --> GTAGAAGATATGTCGGAAGAAGTGGAGTACCGGTGCTTCATTGGTGGGCT
FD946075       --> GTAGAAGATATGTCGGAAGAAGTGGAGTACCGGTGCTTCATTGGTGGGCT
EY931563       --> GTAGAAGATATGTCGGAAGAAGTGGAGTACCGGTGCTTCATTGGTGGGCT
EX765897       --> GTAGAAGATATGTCGGAAGAAGTGGAGTACCGGTGCTTCATTGGTGGGCT

               151    -    201
UN47531        --> TGCGTGGGCAACGTCTGATCGTGGCCTCAGAGATGCCTTTGAGAAGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- ..................................................
EY927486       <-- ..................................................
FD942267       <-- ..................................................
FD529195       <-- ..................................................
EX748937       --> TGCGTGGGCAACGTCTGATCGTGGCCTCAGAGATGCCTTTGAGAAGTATG
FD946075       --> TGCGTGGGCAACGTCTGATCGTGGCCTCAGAGATGCCTTTGAGAAGTATG
EY931563       --> TGCGTGGGCAACGTCTGATCGTGGCCTCAGAGATGCCTTTGAGAAGTATG
EX765897       --> TGCGTGGGCAACGTCTGATCGTGGCCTCAGAGATGCCTTTGAGAAGTATG

               201    -    251
UN47531        --> GTCACCTCACTGAGGCTAAGGTGGTTCTTGACAAGTTTTCTGGGCGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- ..........................................GGCGTTCA
EY927486       <-- ..................................................
FD942267       <-- ..................................................
FD529195       <-- ..................................................
EX748937       --> GTCACCTCACTGAGGCTAAGGTGGTTCTTGACAAGTTTTCTGGGCGTTCA
FD946075       --> GTCACCTCACTGAGGCTAAGGTGGTTCTTGACAAGTTTTCTGGGCGTTCA
EY931563       --> GTCACCTCACTGAGGCTAAGGTGGTTCTTGACAAGTTTTCTGGGCGTTCA
EX765897       --> GTCACCTCACTGAGGCTAAGGTGGTTCTTGACAAGTTTTCTGGGCGTTCA

               251    -    301
UN47531        --> CGTGGTTTTGGGTTCATCACTTTTGATGAGAAGAAAGCTATGGATGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- CGTGGTTTTGGGTTCATCACTTTTGATGAGAAGAAAGCTATGGATGAAGC
EY927486       <-- ..................................................
FD942267       <-- ..................................................
FD529195       <-- ..................................................
EX748937       --> CGTGGTTTTGGGTTCATCACTTTTGATGAGAAGAAAGCTATGGATGAAGC
FD946075       --> CGTGGTTTTGGGTTCATCACATTTGATGAGAAGAAAGCTATGGATGAAGC
EY931563       --> CGTGGTTTTGGGTTCATCACATTTGATGAGAAGAAAGCTATGGATGAAGC
EX765897       --> CGTGGTTTTGGGTTCATCACTTTTGATGAGAAGAAAGCTATGGATGAAGC

               301    -    351
UN47531        --> CATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACTATCACTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- CATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACTATCACTGTTG  Raphanus raphanistrum subsp. maritimus
EY927486       <-- ................GGGGTGGATTTAGATGGGCGGACAATCACTGTTG  Raphanus sativus var. oleiformis
FD942267       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD529195       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX748937       --> CATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACTATCACTGTTG  Raphanus raphanistrum subsp. maritimus
FD946075       --> CATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACAATCACTGTTG  Raphanus sativus cv Early Scarlet Globe
EY931563       --> CATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACAATCACTGTTG  Raphanus sativus var. oleiformis
EX765897       --> CATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACTATCACTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN47531        --> ATAAAGCTCAGCCACAGGGTGGTGGATCCGGCAGGGATCATGATGGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- ATAAAGCTCAGCCACAGGGTGGTGGATCCGGCGGGGATCATGATGGTGAC
EY927486       <-- ATAAAGCTCAGCCACAGGGTGGTGGATCCGGCAGGGATCATGATGGTGAC
FD942267       <-- ..................................................
FD529195       <-- ..................................................
EX748937       --> ATAAAGCTCAGCCACAGGGTGGTGGATCCGGCAGGGATCATGATGGTGAC
FD946075       --> ATAAAGCTCAGCCACAGGGTGGTGGATCCGGCAGGGATCATGATGGTGAC
EY931563       --> ATAAAGCTCAGCCACAGGGTGGTGGATCCGGCAGGGATCATGATGGTGAC
EX765897       --> ATAAAGCTCAGCCACAGGGTGGTGGATCCGGCAGGGATCATGATGGTGAC

               401    -    451
UN47531        --> CGCAGTCGTGATCGTGATCGTGATCGCGGGTATGACCGTGACCGTAGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- CGCAGTCGTGATCGTGATCGTGATCGCGGGTATGACCGTGACCGTAGCCG
EY927486       <-- CGCAGTCGTGATCGTGATCGTGATCGCGGGTATGACCGTGACCGTAGCCG
FD942267       <-- ...............................................CCG
FD529195       <-- ..................................................
EX748937       --> CGCAGTCGTGATCGTGATCGTGATCGCGGGTATGACCGTGACCGTAGCCG
FD946075       --> CGCAGTCGTGATCGTGATCGTGATCGCGGGTATGACCGTGACCGTAGCCG
EY931563       --> CGCAGTCGTGATCGTGATCGTGATCGCGGGTATGACCGTGACCGTAGCCG
EX765897       --> CGCAGTCGTGATCGTGATCGTGATCGCGGGTATGACCGTGACCGTAGCCG

               451    -    501
UN47531        --> TCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- TCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT
EY927486       <-- TCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT
FD942267       <-- TCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT
FD529195       <-- ........GTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT
EX748937       --> TCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT
FD946075       --> TCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT
EY931563       --> TCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT
EX765897       --> TCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAAT

               501    -    551
UN47531        --> GTGGCAAGCCTGGACATTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- GTGGCAAGCCTGGACATTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGA
EY927486       <-- GTGGCAAGCCTGGACATTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGA
FD942267       <-- GTGGCAAGCCTGGACATTTTGCGAGGGAGTTTCCTGATGAATCCGGTAGA
FD529195       <-- GTGGCAAGCCTGGACATTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGA
EX748937       --> GTGGCAAGCCTGGACATTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGA
FD946075       --> GTGGCAAGCCTGGACATTTTGCGAGGGAGTTTCCTGATGAATCCGGTAGA
EY931563       --> GTGGCAAGCCTGGACATTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGA
EX765897       --> GTGGCAAGCCTGGACATTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGA

               551    -    601
UN47531        --> GGTGGTGGTGGGGG-AAGGTACAGCTCGAGAGATGATAGGTACAGCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- GGTGGTGGTGGGGG-AAGGTACAGCTCGAGAGATGATAGGTACAGCTCTA
EY927486       <-- GGTGGTGGTGGGGG-AAGGTACAGCTCGAGAGATGATAGGTACAGCTCTA
FD942267       <-- GGTGGTGGTGGGGG-AAGGTACAGCTCGAGAGATGATAGGTACAGCTCTA
FD529195       <-- GGTGGTGGTGGGGG-AAGGTACAGCTCGAGAGATGATAGGTACAGCTCTA
EX748937       --> GGTGG.............................................
FD946075       --> GGTGGTGGTGGGGGGAAGGTACAGCTCGAGAGATGATAGGTACAGCTCTA
EY931563       --> GGTGGTGGTGGGGG-AAGGTACAGCTCGAGAGATGATAGGTACAGCTCTA
EX765897       --> GGTGGTGGTGGGGGGAAGGTACAGCTCGAGAGATGATAGGTACAGCTCTA

               601    -    651
UN47531        --> GGGATGATAGGTACGGTGCAAAGGATGATAGGTATGGTGGAAAAGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- GGGATGATAGGTACGGTGCAAAGGATGATAGGTATGGTGGAAAAGAAGAT
EY927486       <-- GGGATGATAGGTACGGTGCAAAGGATGATAGGTATGGTGGAAAAGAAGAT
FD942267       <-- GGGATGATAGGTACGGTGCAAAGGATGATAGGTATGGTGGAAAAGAAGAT
FD529195       <-- GGGATGATAGGTACGGTGCAAAGGATGATAGGTATGGTGGAAAAGAAGAT
EX748937       --> ..................................................
FD946075       --> GGGATGATAGGTACGGTGCAAAGGATGATAGGTATGGTGGAAAAGAAGAT
EY931563       --> GGGA..............................................
EX765897       --> GGGATGATAGGTACGGT-CAAAGGATGATAGGTATGGTGGAAAAGAAGAT

               651    -    701
UN47531        --> AGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGGGAACGCTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- AGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGGGAACGCTCTGG
EY927486       <-- AGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGGGAACGCTTTGG
FD942267       <-- AGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGGGAACGTTTTGG
FD529195       <-- AGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGGGAACGCTTTGG
EX748937       --> ..................................................
FD946075       --> AGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGGGAACGCTCTGG
EY931563       --> ..................................................
EX765897       --> AGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGGGAACGCTCTGG

               701    -    751
UN47531        --> TGGAGGACGTAGCAGGGATGATGGCAGCCGTGGGGGTTCAGGAGGTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- TGGAGGACGTAGCAGGGATGATGGCAGCCGTGGGGGTTCAGGAGGTGAGA
EY927486       <-- TGGAGGACGTAGCAGGGATGATGGCAGCCGTGGGGGTTCAGGAGGTGAGA
FD942267       <-- TGGAGGACGTAGCAGGGATGATGGCAGCCGTGGGGGTTCAGGAGGTGAGA
FD529195       <-- TGGAGGACGTAGCAGGGATGATGGCAGCCGTGGGGGTTCAGGAGGTGAGA
EX748937       --> ..................................................
FD946075       --> TGGAGGACGTAGCAGG-ATGATG...........................
EY931563       --> ..................................................
EX765897       --> TGGAGGACGTA.......................................

               751    -    801
UN47531        --> GGCATGGCCGTGCTCCATACGATCGCCCCAGAGACTAGAATTCTTCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- GGCATGGCCGTGCTCCATACGATCGCCCCAGAGACTAGAATTCTTCTCCA
EY927486       <-- GGCATGGCCGTGTTCCATACGATCGCCCCAGAGACTAGAATTCTTCTCCA
FD942267       <-- GGCATGGCCGTGCTCCATACGATCGCCCCAGAGACTAGAATTCTTCTCCA
FD529195       <-- GGCATGGCCGTGCTCCATACGATCGCCCCAGAGACTAAAATTTTTCTCCA
EX748937       --> ..................................................
FD946075       --> ..................................................
EY931563       --> ..................................................
EX765897       --> ..................................................

               801    -    851
UN47531        --> GAGGTCAAACAAGTGGAAGGTTTCTGCTTTTCAGCTCTCATCAAGCGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- GAGGTCAAACAAGTGGAAGGTTTCTGCTTTTCAGCTCTCATCAAGCGGGA
EY927486       <-- GAGGTCAAACAAGTGGAAGGTTTCTGCTTTTCAGCTCTCATCAAGCGGGA
FD942267       <-- GAGGTCAAACAAGTGGAAGGTTTTTGCTTTTCAGCTTTCATCAAGCGGGA
FD529195       <-- GAGGTCAAACAAGTGGAAGGTTTCTGCTTTTCAGCTCTCATCAAGCGGGA
EX748937       --> ..................................................
FD946075       --> ..................................................
EY931563       --> ..................................................
EX765897       --> ..................................................

               851    -    901
UN47531        --> AGTTAGATGGTCTGCTTTGTTGAATGTATTTGGATAGCTCGAGAAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- AGTTAGATGGTCTGCTTTGTTGAATGTATTTGGATAGCTCGAGAAAGAAG
EY927486       <-- AGTTAGATGGTCTGCTTTGTTGAATGTATTTGGATAGCTCGAGAAAGAAG
FD942267       <-- AGTTAGATGGTCTGCTTTGTTGAATGTATTTGGATAGCTCGAGAAAGAAG
FD529195       <-- AGTTAGATGGTCTGCTTTGTTGAATGTATTTGGATAGCTCGAGAAAGAAG
EX748937       --> ..................................................
FD946075       --> ..................................................
EY931563       --> ..................................................
EX765897       --> ..................................................

               901    -    951
UN47531        --> AATGTGTATCTGTTTTGGCACCTTAAACTCAAGAGTCGGCTAATGTCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- AATGTGTATCTGTTTTGGCACCTTAAACTCAAGAGTCGGCTAATGTCCTA
EY927486       <-- AATGTGTATCTGTTTTGGCACCTTAAACTCAAGAGTCGGCTAATGTCCTA
FD942267       <-- AATGTGTATCTGTTTTGGCACCTTAAACTCAAGAGTCGGCTAATGTCCTA
FD529195       <-- AATGTGTATTTGTTTTGGCACCTTAAACTCAAGAGTCGGCTAATGTCCTA
EX748937       --> ..................................................
FD946075       --> ..................................................
EY931563       --> ..................................................
EX765897       --> ..................................................

               951    -   1001
UN47531        --> AGTACTCTCCTTTTGATATGTTGATCCTTTGGAAACCTTGTGCTTAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- AGTACTCTCCTTTTGATATGTTGATCCTTTGGAAACCTTGTGCTTAGTTG
EY927486       <-- AGTACTCTCCTTTTGATATGTTGATCCTTTGGAAACCTTGTGCTTAGTTG
FD942267       <-- AGTAC.............................................
FD529195       <-- AGTACTCTCCTTTTGATATGTTGATCCTTTGGAAACCTTGTGCTTAGTTG
EX748937       --> ..................................................
FD946075       --> ..................................................
EY931563       --> ..................................................
EX765897       --> ..................................................

               1001   -   1051
UN47531        --> GTTTGAGATTGAGAGACACAAATGTGCTACTTTAAGCTTATCGTAATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- GTTTGAGATTGAGAGACACAAATGTGCTACTTTAAGCTTATCGTAATGAA
EY927486       <-- GTTTGAGATTGAGAGACACAAATGTGCTACTTTAAGCTTATCGTAATGAA
FD942267       <-- ..................................................
FD529195       <-- GTTTGAGATTGAGAGACACAAATGTGCTACTTTAAGCTTGTCGTAATGAA
EX748937       --> ..................................................
FD946075       --> ..................................................
EY931563       --> ..................................................
EX765897       --> ..................................................

               1051   -   1101
UN47531        --> TGAGTTGGTTATCCCCAACACCATA...
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV530490       <-- TGAGTTGGTTATCCCCAACACCATAtgg
EY927486       <-- TGAGTTGGTTATCCCCAACACCAaagg.
FD942267       <-- ............................
FD529195       <-- TGAGTTGGTTATCCCCt...........
EX748937       --> ............................
FD946075       --> ............................
EY931563       --> ............................
EX765897       --> ............................