Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN50844

               1      -     51
UN50844        --> CCATCTCCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- CCATCTCCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
EX895170       <-- CCATCTCCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
EX887334       <-- ......CCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
EX902191       <-- ......CCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
FD576576       <-- ......CCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
EW729777       --> CCATCTCCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
EX899379       --> CCATCTCCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
FD581048       --> ......CCAAAAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA
EX891506       --> ..........AAAACGACGCAGTTTTAGCTGAGTGTCTACTCAGCAACAA

               51     -    101
UN50844        --> GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
EX895170       <-- GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
EX887334       <-- GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
EX902191       <-- GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
FD576576       <-- GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
EW729777       --> GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
EX899379       --> GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
FD581048       --> GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT
EX891506       --> GTCACGATTACAAAAGACAATCAAACAAGACAAATCAACCTTCAACGTTT

               101    -    151
UN50844        --> AGAAGAAAAAAAACATAACTTACGGG-AGACAAAGAGTTAACTTTGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- AGAAGAAAAAAAACATAACTTACGGGGAGACAAAGAGTTAACTTTGAACC
EX895170       <-- AGAAGAAAAAAAACATAACTTACGGG-AGACAAAGAGTTAACTTTGAACC
EX887334       <-- AGAAGAAAAAAAACATAACTTA-GGG-AGACAAAGAGTTAACTTTGAACC
EX902191       <-- AGAAGAAAAAAAACATAACTTACGGG-AGACAAAGAGTTAACTTTGAACC
FD576576       <-- AGAAGAAAAAAA-CATAACTTACGGG-AGACAAAGAGTTAACTTTGAACC
EW729777       --> AGAAGAAAAAAAACATAACTTACGGG-AGACAAAGAGTTAACTTTGAACC
EX899379       --> AGAAGAAAAAAAACATAACTTACGGG-AGACAAAGAGTTAACTTTGAACC
FD581048       --> AGAAGAAAAAAA-CATAACTTACGGG-AGACAAAGAGTTAACTTTGAACC
EX891506       --> AGAAGAAAAAAAACATAACTTA-GGG-AGACAAAGAGTTAACTTTGAACC

               151    -    201
UN50844        --> CAACAA-GCTTTAAAA-TTCAACAGAGAAATCGAAAAACTTGTGTCCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- CAACAAAGCTTTAAAAATTCAACAGAGAAATCGAAAAACTTGTGTCCAAC
EX895170       <-- CAACAA-GCTTTAAAA-TTCAACAGAGAAATCGAAAAACTTGTGTCCAAC
EX887334       <-- CAACAA-GCTTTAAAA-TTCAACAGAGAAATCGAAAAACTTGTGTCCAAC
EX902191       <-- CAACAA-GCTTTAAAA-TTCAACAGAGAAATCGAAAAACTTGTGTCCAAC
FD576576       <-- CAACAA-GCTTTAAAA-TTCAACAGAGAAATCGAAAAACTCGTGTCCAAC
EW729777       --> CAACAA-GCTTTAAAA-TTCAACAGAGAAATCGAAAAACTTGTGTCCAAC
EX899379       --> CAACAA-GCTTTAAAA-TTCAACAGAGAAATCGAAAAACTTGTGTCCAAC
FD581048       --> CAACAA-GCTTTAAAA-TTCAACAGAAAAATCGAAAAACTCGTGTCCAAC
EX891506       --> CAACAA-GCTTTAAAA-TTCAACAGAAAAATCGAAAAACTTGTGTCCAAC

               201    -    251
UN50844        --> ACAACCAACATATTATTAATAAAAGCCCAGAAGAAGCATTTGCGTTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- ACAACCAACATATTATTAATAAAAGCCCAGAAGAAGCATTTGCGTTCATC
EX895170       <-- ACAACCAACATATTATTAATAAAAGCCCAGAAGAAGCATTTGCGTTCATC
EX887334       <-- ACAACCAACATATTATTAATAAAGGCCCAGAAGAAGCATTTGCGTTCATC
EX902191       <-- ACAACCAACATATTATTAATAAAAGCCCAGAAGAAGCATTTGCGTTCATC
FD576576       <-- ACAACCAACATATTATTAATAAAAGCCCAGAAGAAGCATTTGCGTTCATC
EW729777       --> ACAACCAACATATTATTAATAAAAGCCCAGAAGAAGCATTTGCGTTCATC
EX899379       --> ACAACCAACATATTATTAATAAAAGCCCAGAAGAAGCATTTGCGTTCATC
FD581048       --> ACAACCAACATATTATTAATAAAAGCCCAGAAAAAGCATTTGCGTTCATC
EX891506       --> ACAACCAACATATTATTAATAAAGGCCCAGAAGAAGCATTTGCGTTCATC

               251    -    301
UN50844        --> TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- TTGTGCCTACTGTTTCCAGCAAC...........................
EX895170       <-- TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG
EX887334       <-- TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG
EX902191       <-- TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG
FD576576       <-- TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG
EW729777       --> TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG
EX899379       --> TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG
FD581048       --> TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG
EX891506       --> TTGTGCCTACTGTTTCCAGCAACTGATCAAAGCTATTCAGTGAGAAGGAG

               301    -    351
UN50844        --> CAGGCTGCTTTTGATTATGGTGAGACGATGATTTGGAAGGAGCCACGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- ..................................................
EX895170       <-- CAGGCTGCTTTTGATTATGGTGAGACGATGATTTGGAAGGAGCCACGGCT
EX887334       <-- CAGGCTGCTTTTGATTATGGTGAGACGATGATTTGGAAGGAGCCACGGCT
EX902191       <-- CTGGCTGCTTTTGATTATGtc.............................
FD576576       <-- CAGGCTGCTTTTGATTATGGTGAGACGATGATTTGGAAGGAGCCACGGCT
EW729777       --> CAGGCTGCTTTTGATTATGGTGAGACGATGATTTGGAAGGAGCCACGGCT
EX899379       --> CAGGCTGCTTTTGATTATGGTGAGACGATGATTTGGAAGGAGCCACGGCT
FD581048       --> CAGGCTGCTTTTGATTATGGTGAGACGATGATTTGGAAGGAGCCACGGCT
EX891506       --> CAGGCTGCTTTTGATTATGGTGAGACGATGATTTGGAAGGAGCCACGGCT

               351    -    401
UN50844        --> TTGCTGTAGATCTGCTCACCCACGAGGTACACGCAGAAGGCAGCGACGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX895170       <-- TTGCTGTAGATCTGCTCACCCACGAGGTACACACAGAAGGCAGCGACGCC  Raphanus sativus cv Early Scarlet Globe
EX887334       <-- TTGCTGTAGATCTGCTCACCCACGAGGTACACGCAGAAGGCAGCGACGCC  Raphanus sativus var. oleiformis
EX902191       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD576576       <-- TTGCTATAGATCTGCTCACCCACGAGGTACACGCAGAAGGCAGCGACGCC  Raphanus sativus cv Rat-Tail Radish #3870
EW729777       --> TTGCTGTAGATCTGCTCACCCACGAGGTACACACAGAAGGCAGCGACGCC  Raphanus sativus cv Early Scarlet Globe
EX899379       --> TTGCTGTAGATCTGCTCACCCACGAGGTACACACAGAAGGCAGCGACGCC  Raphanus sativus cv Early Scarlet Globe
FD581048       --> TTGCTATAGATCTGCTCACCCACGAGGTACACGCAGAAGGCAGCGACGCC  Raphanus sativus cv Rat-Tail Radish #3870
EX891506       --> TTGCTGTAGATCTGCTCACCCACGAGGTACACGCAGAAGGCAGCGACGCC  Raphanus sativus var. oleiformis

               401    -    451
UN50844        --> GATGCCGAGCCCGGGAAGAGCGTGCCTCATTTGATTCGAAAGCATCGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- ..................................................
EX895170       <-- GATGCCGAGCCCGGGAAGAGCGTGCCTCATTTGATTCGAAAGCATCGGGT
EX887334       <-- GATGCCGAGC........................................
EX902191       <-- ..................................................
FD576576       <-- GATGCCGAGCCCGGGAAGAGCGTGCCTCATTTGATTCGAAAGCATCGGGT
EW729777       --> GATGCCGAGCCCGGGAAGAGCGTGCCTCATTTGATTCGAAAGCATCGGGT
EX899379       --> GATGCCGAGCCCGGGAAGAGCGTGCCTCATTTGATTCGAAAGCATCGGGG
FD581048       --> GATGCCGAGCCCGGGAAGAGCGTGCCTCATTTGATTCGAAAGCATCGGGT
EX891506       --> GATGCCGAGCCCGGGAAGAGCGTGCCTCATTTGATTCGAAAGCATCGGGT

               451    -    501
UN50844        --> GCTTCCTCCATTCGTCTCTTCGCCGGAAAAACTCGCCGGTAGTACCTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- ..................................................
EX895170       <-- GCTTCCTCCATTCGTCTCTTCGCCGGAAAAACTCGCCGGTAGTACCTAAA
EX887334       <-- ..................................................
EX902191       <-- ..................................................
FD576576       <-- GCTTCCTCCATTCGTCTCTTCGCCGGAAAAACTCGCCGGTAGTACCTAAA
EW729777       --> GCTTCCTCCATTCGTCTCTTCGCCGGAAAAACTCGCCGGTAGTACCTAAA
EX899379       --> GCTTCCTCCATTCGTCTCTTCGCCGGAAAAACTCGCCGGTAGTACCTAAA
FD581048       --> GCTTCCTCCATTCGTCTCTTCGCCGGAAAAACTCGCCGGTAGTACCTAAA
EX891506       --> GCTTCCTCCATTCGTCTCTTCGCCGGAAAAACTCGCCGGTAGTACCTAAA

               501    -    551
UN50844        --> GGCTTCGCCATTTTCTTTCCGGTGTTCGATTGGAATCCCCTGCGACCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725182       <-- ..................................................
EX895170       <-- GGCTTCGCCATTTTCTTTCCGGTGTTCGATTGGAATCCCCTGCGACCGAC
EX887334       <-- ..................................................
EX902191       <-- ..................................................
FD576576       <-- GGCTTCGCCATTTTCTTTCCGGTGTTCGATTGGAATCCCCTGCGACCGAC
EW729777       --> GGCTTCGCCATTTTCTTTCCGGTGTTCGATTGGAATCCCCTGCGACCGAC
EX899379       --> GGCTTCGCCATTTTCTTTCCGGTGTTCGATTGGAATCCCCTGCGACCGAC
FD581048       --> GGCTTCGCCATTTTCTTTCCG.............................
EX891506       --> GGCTTCGCCATTTTCTTTCCGGTGTTCGATTcc.................

               551    -    601
UN50844        --> GACCGTCC
                   ~~~~~~~~
EW725182       <-- ........
EX895170       <-- GACCGTCC
EX887334       <-- ........
EX902191       <-- ........
FD576576       <-- GACCGTCC
EW729777       --> GACCGTCC
EX899379       --> GACCGTCC
FD581048       --> ........
EX891506       --> ........