Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN51154

               -1     -     49
UN51154        --> ..GGGACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- ..GGGACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAA
FD959325       <-- gggacACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAA
FY441950       <-- ....................GTCTGCGCCTATTGATCCTCTCACCGGGAA
EY895974       <-- ..................................................
EV568769       --> ..GGGACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAA
EY901036       --> .aGGGACACACAATGGCTTCGTCAGCGCCTATTGATCCTCTCACCGGGAA
EX747193       --> gggacACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAA
EY900427       --> .............................gATTGATCCTCTCACCGGGAA
FD962867       --> ..................................................

               49     -     99
UN51154        --> AGATCCGGCGAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- AGATCCGGCGAAGGCTTTAACCGCCGTAGCATCGGGTTTTTTCGAGAATG  Raphanus raphanistrum subsp. landra
FD959325       <-- AGATCCGGCGAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATG  Raphanus raphanistrum subsp. maritimus
FY441950       <-- AGATCCGGCGAAGGCTTTAACCGCCGTAGCATCGGGTTTTTTCGAGAATG  Raphanus sativus cv GSK3-1
EY895974       <-- ............GGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATG  Raphanus raphanistrum subsp. maritimus
EV568769       --> AGATCCGGCGAAGGCTTTAACCGCCGTAGCATCGGGTTTTTTCGAGAATG  Raphanus raphanistrum subsp. landra
EY901036       --> AGATCCGGCTAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATG  Raphanus raphanistrum subsp. maritimus
EX747193       --> AGATCCGGCGAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATG  Raphanus raphanistrum subsp. maritimus
EY900427       --> AGATCCGGCGAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATG  Raphanus raphanistrum subsp. maritimus
FD962867       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               99     -    149
UN51154        --> TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
FD959325       <-- TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
FY441950       <-- TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
EY895974       <-- TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
EV568769       --> TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
EY901036       --> TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
EX747193       --> TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
EY900427       --> TGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATC
FD962867       --> ..................................................

               149    -    199
UN51154        --> TTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- TTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
FD959325       <-- TTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
FY441950       <-- TTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
EY895974       <-- TTGCTTTTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
EV568769       --> TTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
EY901036       --> TTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
EX747193       --> TTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
EY900427       --> TTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCT
FD962867       --> ..................................................

               199    -    249
UN51154        --> GGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- GGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATC
FD959325       <-- GGAGGAAGACACGACTGTTCTCAAGAAGGAGAGTGATAGTTTGACTGATC
FY441950       <-- GGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATC
EY895974       <-- GGAGGAAGACACGACTGTTTTCAAGAAGGAGAGCGATAGTTTGACTGATC
EV568769       --> GGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATC
EY901036       --> GGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATC
EX747193       --> GGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATC
EY900427       --> GGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATC
FD962867       --> ................................gtGATAGTTTGACTGATC

               249    -    299
UN51154        --> GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT
FD959325       <-- GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT
FY441950       <-- GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT
EY895974       <-- GTATGAATAGAATCAAGAGCGATTTTTTGCATCAAGCGTCCATTGACTCT
EV568769       --> GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT
EY901036       --> GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT
EX747193       --> GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT
EY900427       --> GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT
FD962867       --> GTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCT

               299    -    349
UN51154        --> TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTTACGATAAAAA
FD959325       <-- TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAA
FY441950       <-- TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAA
EY895974       <-- TCCGGCGTCTTTGCTGCTCGACTCCGTTTACTTTTCGGTGACGATAAAAA
EV568769       --> TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTTACGATAAAAA
EY901036       --> TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAA
EX747193       --> TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAA
EY900427       --> TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAA
FD962867       --> TCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAA

               349    -    399
UN51154        --> GTGACGGGGGATTGAATTTTG-TCTGAAGTCAACGAGATTTACGATCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- GTGACGGGGGATTGAATTTTG-TCTGAAGTCAACGAGATTTACGATCATG
FD959325       <-- GTGACGGGGGATTGAATTTTG-TCTGAAGTCAACGAGATTTACGATCATG
FY441950       <-- GTGACGGGGGATTGAATTTTGGTTTGAAGTCAACGAG-GTTACGATCATG
EY895974       <-- GTGACGGGGGATTGAATTTTG-TTTGAAGTCAACGAGATTTACGATCATG
EV568769       --> GTGACGGGGGATTGAATTTTG-TCTGAAGTCAACGAGATTTACGATCATG
EY901036       --> GTGACGGGGGATTGAATTTTG-TCTGAAGTCAACGAGATTTACGATCATG
EX747193       --> GTGACGGGGGATTGAATTTTG-TCTGAAGTCAACGAGATTTACGATCATG
EY900427       --> GTGACGGGGGATTGAATTTTG-TCTGAAGTCAACGAGATTTACGATCATG
FD962867       --> GTGACGGGGGATTGAATTTTG-TCTGAAGTCAACGAGATTTACGATCATG

               399    -    449
UN51154        --> CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGTGTC
FD959325       <-- CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTC
FY441950       <-- CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGTGTC
EY895974       <-- CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTC
EV568769       --> CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGTGTC
EY901036       --> CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTC
EX747193       --> CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTC
EY900427       --> CGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTC
FD962867       --> CGATGTTGTATTAATTTTATACAGATGTCTCTGTCTGTAAACGATGCGTC

               449    -    499
UN51154        --> TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGCGTTGTGA
FD959325       <-- TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGA
FY441950       <-- TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGA
EY895974       <-- TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGA
EV568769       --> TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGCGTTGTGA
EY901036       --> TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGA
EX747193       --> TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGA
EY900427       --> TTTGTCAG-GAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGA
FD962867       --> TTTGTCAGAGAATTTAGCGAATGAATAAGTAAGGTTGCAA..........

               499    -    549
UN51154        --> TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
FD959325       <-- TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
FY441950       <-- TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
EY895974       <-- TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
EV568769       --> TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
EY901036       --> TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
EX747193       --> TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
EY900427       --> TTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATG
FD962867       --> ..................................................

               549    -    599
UN51154        --> TTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- TTT-ATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
FD959325       <-- TTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
FY441950       <-- TTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
EY895974       <-- TTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
EV568769       --> TTT-ATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
EY901036       --> TTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
EX747193       --> TTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
EY900427       --> TTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCA
FD962867       --> ..................................................

               599    -    649
UN51154        --> TCGAACACTTTAACTGCGTTTTTACACTACTGGGTATATATGTCTTAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- TCGAACACTTTAACTGCGTTTTTACACTACTGGGTATATATGTCTTAAGG
FD959325       <-- TCGAACACTTTAACTGCGTTTTTACACT......................
FY441950       <-- TCGAACACTTTAACTGCGTTTTTcccct......................
EY895974       <-- TCGAACACTTTAACTGCGTTTTTACACT......................
EV568769       --> TCGAACACTTTAACTGCGTTTTTACACTACTGGGTATATATGTCTTAAGG
EY901036       --> ..................................................
EX747193       --> TCGAACACTTTAACTGCGTTTTTAC.........................
EY900427       --> TCGAACACTTTAACTGCGTTTTTACACT......................
FD962867       --> ..................................................

               649    -    699
UN51154        --> TCAAAACCCAACTGCAATAAGCATATTTAAATTCCGGAATTGGAAACTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573419       <-- TCAAAACCCAACTGCAATAAGCATATTTAAATTCCGGAATTGGAAACTAG
FD959325       <-- ..................................................
FY441950       <-- ..................................................
EY895974       <-- ..................................................
EV568769       --> TCAAAACCCAACTGCAATAAGCATATTTAAATTCCGGAATTGGAAACTAG
EY901036       --> ..................................................
EX747193       --> ..................................................
EY900427       --> ..................................................
FD962867       --> ..................................................

               699    -    749
UN51154        --> C
                   ~
EV573419       <-- C
FD959325       <-- .
FY441950       <-- .
EY895974       <-- .
EV568769       --> C
EY901036       --> .
EX747193       --> .
EY900427       --> .
FD962867       --> .