1      -     51
UN51197        --> GGAGTAAAAGAAACACACAGAGAACGAGAAAGAACAAGAAGATTCGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- GGAGTAAAAGAAACACACAGAGAACGAGAAAGAACAAGAAGATTCGATAT  Raphanus raphanistrum subsp. landra
EW720373       <-- ..............ggACAGAGAACGAGAAAGAACAAGAAGATTCGATTT  Raphanus sativus var. oleiformis
FD559058       --> GGAGTAAAAGAAACACACAGAGAACGAGAAAGAACAAGAAGATTCGATAT  Raphanus raphanistrum subsp. landra
EW715882       --> ..............ggACAGAGAACGAGAAAGAACAAGAAGATTCGATTT  Raphanus sativus var. oleiformis
EX763614       --> ................ACAGAGAACGAGAAAGAACAAGAAGATTCGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441359       --> .................................gacAGAAGATTCGATTT  Raphanus sativus cv GSK3-1
FY442113       --> ..................................................  Raphanus sativus cv GSK3-1
FY441661       --> ..................................................  Raphanus sativus cv GSK3-1
FY443976       --> ..................................................  Raphanus sativus cv GSK3-1
FY440170       --> ..................................................  Raphanus sativus cv GSK3-1
FD963170       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN51197        --> AGAAAAAGTAATAAGAATGTTGCTGGTGACGGTATTGGCCGAGATGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- AGAAAAAGTAATAAGAATGTTGCTGGTGACGGTATTGGCCGAGATGTTGA
EW720373       <-- AGAAAAAGTAATAAGAATGTTGCTGGTGACGGTATTGGCCGAGATGTTGA
FD559058       --> AGAAAAAGTAATAAGAATGTTGCTGGTGACGGTATTGGCCGAGATGTTGA
EW715882       --> AGAAAAAGTAATAAGAATGTTGCTGGTGACGGTATTGGCCGAGATGTTGA
EX763614       --> AGAAAAAGTAATAAGAATGTTGCTGGTGACGGTATTGGCCGAGATGTTGA
FY441359       --> AGAAAA-GTAATAAGAATGTTGCTGGTGACGGTATTGGCCGAGATGTTGA
FY442113       --> ...........TAAGAATGTTGCTGGTGACGGTATTGGCCGAGATGTTGA
FY441661       --> ......................CTGGTGACGGTATTGGCCGAGATGTTGA
FY443976       --> ......................CTGGTGACGGTATTGGCCGAGATGTTGA
FY440170       --> .............................CGGTATTGGCCGAGATGTTGA
FD963170       --> ..................................................

               101    -    151
UN51197        --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTTTCAG
EW720373       <-- AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
FD559058       --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
EW715882       --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
EX763614       --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
FY441359       --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
FY442113       --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
FY441661       --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
FY443976       --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
FY440170       --> AGGACTACACGGTGGTACTCGCCGGAGCTTTGGAGTATCTCTTCTCTCAG
FD963170       --> ..................................................

               151    -    201
UN51197        --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
EW720373       <-- GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
FD559058       --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
EW715882       --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
EX763614       --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
FY441359       --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
FY442113       --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
FY441661       --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
FY443976       --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
FY440170       --> GCGCCTTTTCCGAGGAGAATTCGACTTCATATATTATATTCTCTTCCTTT
FD963170       --> ....................gCGACTTCATATATTATATTCTCTTCCTTT

               201    -    251
UN51197        --> CCATCGCTCCAGTTCCTCTAACCCTTTTCTCCCTCCTTCTCCTCCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- CCATCGCTCCAGTTCCTCTAACCCTCTTCTCCCTCCTCCTCCTCCTCCTT  Raphanus raphanistrum subsp. landra
EW720373       <-- CCATCGCTCCAGTTCCTCTAACCCTTTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus sativus var. oleiformis
FD559058       --> CCATCGCTCCAGTTCCTCTAACCCTCTTCTCCCTCCTCCTCCTCCTCCTT  Raphanus raphanistrum subsp. landra
EW715882       --> CCATCGCTCCAGTTCCTCTAACCCTTTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus sativus var. oleiformis
EX763614       --> CCATCGCTCCAGTTCCTCTAACCCTCTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441359       --> CCATCGCTCCAGTTCCTCTAACCCTTTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus sativus cv GSK3-1
FY442113       --> CCATCGCTCCAGTTCCTCTAACCCTTTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus sativus cv GSK3-1
FY441661       --> CCATCGCTCCAGTTCCTCTAACCCTTTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus sativus cv GSK3-1
FY443976       --> CCATCGCTCCAGTTCCTCTAACCCTTTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus sativus cv GSK3-1
FY440170       --> CCATCGCTCCAGTTCCTCTAACCCTTTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus sativus cv GSK3-1
FD963170       --> CCATCGCTCCAGTTCCTCTAACCCTCTTCTCCCTCCTTCTCCTCCTCCTT  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN51197        --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
EW720373       <-- ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
FD559058       --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
EW715882       --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
EX763614       --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
FY441359       --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
FY442113       --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
FY441661       --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
FY443976       --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
FY440170       --> ACGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT
FD963170       --> ATGCTCCTACTTTATAACTCAGAATCATGATGTGTTGACTTTATGATTTT

               301    -    351
UN51197        --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATATT  Raphanus raphanistrum subsp. landra
EW720373       <-- TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATCTT  Raphanus sativus var. oleiformis
FD559058       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATATT  Raphanus raphanistrum subsp. landra
EW715882       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATCTT  Raphanus sativus var. oleiformis
EX763614       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441359       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATCTT  Raphanus sativus cv GSK3-1
FY442113       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATCTT  Raphanus sativus cv GSK3-1
FY441661       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATCTT  Raphanus sativus cv GSK3-1
FY443976       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATCTT  Raphanus sativus cv GSK3-1
FY440170       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATCTT  Raphanus sativus cv GSK3-1
FD963170       --> TCTTTGAGTTGAGTCGTGTAATCCAGAGCCTTCGTTGTAAATAAAATATT  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN51197        --> TCCTAATGATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- TCCTAATAATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA  Raphanus raphanistrum subsp. landra
EW720373       <-- TCCTAATGATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA  Raphanus sativus var. oleiformis
FD559058       --> TCCTAATAATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA  Raphanus raphanistrum subsp. landra
EW715882       --> TCCTAATGATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA  Raphanus sativus var. oleiformis
EX763614       --> TCCTAATAATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441359       --> TCCTAATGATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA  Raphanus sativus cv GSK3-1
FY442113       --> TCCTAATGATGC......................................  Raphanus sativus cv GSK3-1
FY441661       --> TCCTAATGATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA  Raphanus sativus cv GSK3-1
FY443976       --> TCCTAATG..........................................  Raphanus sativus cv GSK3-1
FY440170       --> TCCTAATGATGCATCCTTTTGTTG..........................  Raphanus sativus cv GSK3-1
FD963170       --> TCCTAATAATGCATCCTTTTGTTGAAAACACAAAAGAAACAAGTTACAGA  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN51197        --> GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTGAATTGATCTGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTGAATCGATCTGTTAA  Raphanus raphanistrum subsp. landra
EW720373       <-- GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTCAATTGATCTGTTAA  Raphanus sativus var. oleiformis
FD559058       --> GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTGAATCGATCTGTTAA  Raphanus raphanistrum subsp. landra
EW715882       --> GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTCAATTGATCTGTTAA  Raphanus sativus var. oleiformis
EX763614       --> GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTGAATTGATCTGTTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY441359       --> GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTCAATTGATCTGTTAA  Raphanus sativus cv GSK3-1
FY442113       --> ..................................................  Raphanus sativus cv GSK3-1
FY441661       --> GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTCAATTGATCTGTTAA  Raphanus sativus cv GSK3-1
FY443976       --> ..................................................  Raphanus sativus cv GSK3-1
FY440170       --> ..................................................  Raphanus sativus cv GSK3-1
FD963170       --> GCTTTGTTTGTATCTCCTTTTGTTATATTTTTCTTGAATTGATCTGTT..  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN51197        --> AGAAGATTTTTGTATTGAAACCAATATGAGAAGAAGACTGTTTTTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD554832       <-- AGAAGATTTTTGTATTGAAACCAATATGAGAAGAAGACTGTTTTTTTTTT
EW720373       <-- AGAAGATTTTTGT.....................................
FD559058       --> AGAAGATTTTTGTATTGAAACCAATATGAGAAGAAGACTGTTTTTTTTTT
EW715882       --> AGAAGATTTTTGT.....................................
EX763614       --> AGAAGATTTTTGTATTGAA...............................
FY441359       --> AGAAGATTTTTGTATTGAAACC............................
FY442113       --> ..................................................
FY441661       --> AGAAGATTTTTGTATTGAAACCAATATGAGAAGAAGACTGTTTTTTTTT.
FY443976       --> ..................................................
FY440170       --> ..................................................
FD963170       --> ..................................................

               501    -    551
UN51197        --> TGAC
                   ~~~~
FD554832       <-- TGAC
EW720373       <-- ....
FD559058       --> TGAC
EW715882       --> ....
EX763614       --> ....
FY441359       --> ....
FY442113       --> ....
FY441661       --> ....
FY443976       --> ....
FY440170       --> ....
FD963170       --> ....