1      -     51
UN51301        --> GAGGGAAAAAGCTTGTCGGCTGGCTATGAAACACATACATTACGAAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> GAGGGAAAAAGCTTGTCGGCTGGCTATGAAACACATACATTACGAAGATG
FD533810       --> ..................................................
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               51     -    101
UN51301        --> AGAATAGCCGTTATATCACCATCGGATGTGTTGAGAAGGTATTGTGCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> AGAATAGCCGTTATATCACCATCGGATGTGTTGAGAAGGTATTGTGCATG
FD533810       --> .....................................GGTATTGTGCATG
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               101    -    151
UN51301        --> CTTGCATGTTGGATTGATGACCCTGATGGAGACTACTTTAAGAAGCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> CTTGCATGTTGGATTGATGACCCTGATGGAGACTACTTTAAGAAGCATCT
FD533810       --> CTTGCATGTTGGATTGATGACCCTGATGGAGACTACTTTAAGAAGCATCT
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               151    -    201
UN51301        --> TGCTAGAATTCCGGATTACATGTGGGTCGCTGAAGATGGAATGAAAATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> TGCTAGAATTCCGGATTACATGTGGGTCGCTGAAGACGGAATGAAAATGC
FD533810       --> -GCTAGAATTCCGGATTACATGTGGGTCGCTGAAGATGGAATGAAAATGC
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               201    -    251
UN51301        --> AGAGCTTTGGAAGTCAACTTTGGGATACAGGGTTTGCGGTTCAAGCTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> AGAGCTTTGGAAGTCAACTTTGGGATACAGGGTTTGCGGTTCAAGCTATA
FD533810       --> AGAGCTTTGGAAGTCAACTTTGGGATACAGGGTTTGCGGTTCAAGCTATA
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               251    -    301
UN51301        --> CTTGCGAGTGATCTTTTTGATGAAACTGGCAATGTACTGAAGAAAGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> CTTGCGAGTGATCTTTTTGATGAAACTGGCAATGTACTGAAGAAAGGACA
FD533810       --> CTTGCGAGTGATCTTTTTGATGAAACTGGCAATGTACTGAAGAAAGGACA
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               301    -    351
UN51301        --> TGATTATATTAAGAAATCTCAGGTTAGAGAAAACCCGTGTGGTGACTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> TGATTATATTAAGAAATCTCAGGTTAGAGAAAACCCGTGTGGTGACTTTA
FD533810       --> TGATTATATTAAGAAATCTCAGGTTAGAGAAAACCCGTGTGGTGACTTTA
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               351    -    401
UN51301        --> AGTGCATGTACCGCCACATTTCCAAAGGAGCATGGACTTTATCTGATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> AGAGCATGTACCGCCACATTTCCAAAGGAGCATGGACTTTATCTGATCGA
FD533810       --> AGTGCATGTACCGCCACATTTCCAAAGGAGCATGGACTTTATCTGATCGA
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               401    -    451
UN51301        --> GATCATGGATGGCAAGTTTCAGATTGTACGGCTGAAGCTTTAAAGTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> GATCATGGATGGCAAGTTTCAGATTGTACGGCTGAAGCTTTAAAGTGCTG
FD533810       --> GATCATGGATGGCAAGTTTCAGATTGTACGGCTGAAGCTTTAAAGTGCTG
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               451    -    501
UN51301        --> CCTGCTGCTCTCCACCGTGCCATCTGAGGTTTTTGGCCAGCAAATAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> CCTGCTGCTCTCCACCGTGCCATCTGAGGTTGTTGGCCAGCAAATAGATC
FD533810       --> CCTGCTACTCTCCACCATGCCATCTGAGGTTTTTGGCCAGCAAATAGATC
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               501    -    551
UN51301        --> CCGAGCAGATATATGATTCTGTTAATCTCTTGCTATCTTTTCAGAGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> CCGAGCAGATATATGATTCTGTTAATCTCTTGCTATCTTTTCAGAGTGAG
FD533810       --> CCGAGCAGATATATGATTCTGTTAATCTCTTGCTATCTTTTCAGAGTGAG
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               551    -    601
UN51301        --> AAAGGAGGTGTGACTGCATGGGAGCCTGTCCGTGCATATGAATGGATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> AAAGGAGGTGTGACTGCATGGGAACCTATCCGTGCATATGAATGGATTGA
FD533810       --> AAAGGAGGTGTGACTGCATGGGAGCCTGTCCGTGCATATGAATGGATTGA
FD572024       --> ....................................gATGAATGGATTGA
EY938488       --> .....................................gTGAATGGATTGA
EX750059       --> ..................................................

               601    -    651
UN51301        --> ATTTCTCAACCCCACAGAATTTCTTGCTAATCTCGTGGCCGAGCGTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ..................................................
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> ATTTCTCAACCCCACAGAATTTCTTGCTAATCTCGTGGCCGAGCGTGAGT
FD533810       --> ATTTCTCAACCCCACAGAATTTCTTGCTAATCTCGTGGCCGAGCGTGAGT
FD572024       --> ATTTCTCAACCCCACAGAATTTCTTGCTAATCTCGTGGCCGAGCGTGAGT
EY938488       --> ATTTCTCAACCCCACAGAATTTCTTGCTAATCTCGTGGCCGAGCGTGAGT
EX750059       --> ....gTCAACCCCACAGAATTTCTTGCTAATCTCGTGGCCGAGCGTGAGT

               651    -    701
UN51301        --> ATGTGGAGTGCACCTCGTCTGTTATACAAGCTTTGGTTCTGTTCCAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- .................TCTGTTATACAAGCTTTGGTTCTGTTCCAGCAA
EX753615       <-- ..................................................
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> ATGTGGAGTGCACCTCGTCTGTTATACAAGCTTTGGTTCTGTTCCAGCAA
FD533810       --> ATGTGGAGTGCACCTCGTCTGTTATACAAGCTTTGGTTCTGTTCCAGCAA
FD572024       --> ATGTGGAGTGCATCTCGTCTGTTATACAATCTTTGGTTCTGTTCCAGCAA
EY938488       --> ATGTGGAGTGCACCTCGTCTGTTATACAAGCTTTGGTTCTGTTCCAGCAA
EX750059       --> ATGTGGAGTGCACCTCGTCTGTTATACAAGCTTTGGTTCTGTTCCAGCAA

               701    -    751
UN51301        --> CTCTATCCGGACCACAGGACAAAAGAGATAAGCAGGTCCATCGAGAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- CTCTATCCGGACCACAGGACAAAAGAGATAAGCAAGTCCATCGA-AAAGC
EX753615       <-- ................GGACAAAAGAGATAAGCAGGTCCATCGAGAAAGC
FD575754       <-- ..................................................
EY934616       <-- ..................................................
EY938978       --> CTCTATCCGa........................................
FD533810       --> CTCTATCCGGACCACAGGACAAAAGAGATAAGCAAGTCCATCGA-AAAGC
FD572024       --> CTCTATCCGGACCACAGGACAAAAGAGATAAGCAGGTCCATCGAGAAAGC
EY938488       --> CTCTATCCGGACCACAGGACAAAAGAGATAAGCAGGTCCATCGAGAAAGC
EX750059       --> CTCTATCCGGACCACAGGACAAAAGAGATAAGCAGGTCCATCGAGAAAGC

               751    -    801
UN51301        --> GGTGCAATTCCTTGAAAACGAACAAAAGCCAGATGGTTCATGGTATGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- GGTGCAATTCCTTGAAAACGAACAAAAGCCAGATGGTTCATGGTATGGGA
EX753615       <-- GGTGCAATTCCTTGAAAACGAACAAAAGCCAGATGGTTCATGGTATGGGA
FD575754       <-- ......................CAAAAGCCAGATGGTTCATGGTATGGGA
EY934616       <-- ..................................................
EY938978       --> ..................................................
FD533810       --> GGTGCAATTCCTTGAAAc................................
FD572024       --> GGTGCAATTCCTTGAAAACGAACAAAAGCCAGATGGTTCATGGTATGGGA
EY938488       --> GGTGCAATTCCTTGAAAACGAACAAAAGCCAGATGGTTCATGGTATGGGA
EX750059       --> GGTGCAATTCCTTGAAAACGAACAAAAGCCAGATGGTTCATGGTATGGGA

               801    -    851
UN51301        --> ATTGGGGTGTTTGTTTCATTTACGCCACATGGTTTGCACTAGGCGGCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ATTGGGGTGTTTGTTTCATTTACGCCACATGGTTTGCACTAGGCGGCCTA  Raphanus raphanistrum subsp. maritimus
EX753615       <-- ATTGGGGTGTTTGTTTCATTTACGCCACATGGTTTGCACTAGGCGGCCTA  Raphanus raphanistrum subsp. maritimus
FD575754       <-- ATTGGGGTGTTTGTTTCATCTACGCCACATGGTTTGCACTAGGCGGCCTA  Raphanus sativus cv Early Scarlet Globe
EY934616       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938978       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD572024       --> ATTGGGGTGTTTGTTTCATCTACGCCACATGGTTTGCACTAGGCGGCCTA  Raphanus sativus cv Early Scarlet Globe
EY938488       --> ATTGGGGTGTTTGTTTCATCTACGCCACATGGTTTGCACTAGGCGGCCTA  Raphanus sativus cv Early Scarlet Globe
EX750059       --> ATTGGGGTGTTTGTTTCATTTACGCCACATGGTTTGCACTAGGCGGCCTA  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN51301        --> GCAGCTGCTGGTAAAACATATGAAAATAGTCTTGCTATGCGTAAAGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- GCAGCTGCTGGTAAAACATATGAAAATAGTCTTGCTATGCGTAAAGGTGT  Raphanus raphanistrum subsp. maritimus
EX753615       <-- GCAGCTGCTGGTAAAACATATGAAAATAGTCTTGCTATGCGTAAAGGTGT  Raphanus raphanistrum subsp. maritimus
FD575754       <-- GCAGCTACTGGTAAAACATATGAAAATAGTCTTGCTATGCGTAAAGGTGT  Raphanus sativus cv Early Scarlet Globe
EY934616       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938978       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD572024       --> GCAGCTACTGGTAAAACATATGAAAATAGTCTTGCTATGCGTAAAGGTGT  Raphanus sativus cv Early Scarlet Globe
EY938488       --> GCAGCTACTGGTAAAACATATGAAAATAGTCTTGCTATGCGTAAAGGTGT  Raphanus sativus cv Early Scarlet Globe
EX750059       --> GCAGCTGCTGGTAAAACATATGAAAATAGTCTTGCTATGCGTAAAGGTGT  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN51301        --> TGAGTTCTTACTTAGGACACAGAAAGATGATGGAGGTTGGGGTGAAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- TGAGTTCTTACTCAGGACACAAAAAGATGATGGAGGTTGGGGTGAAAGCT  Raphanus raphanistrum subsp. maritimus
EX753615       <-- TGAGTTCTTACTCAGGACACAAAAAGATGATGGAGGTTGGGGTGAAAGCT  Raphanus raphanistrum subsp. maritimus
FD575754       <-- TGAGTTCTTACTTAGGACACAGAAAGATGATGGAGGTTGGGGTGAAAGCT  Raphanus sativus cv Early Scarlet Globe
EY934616       <-- ..............................TGGAGGTTGGGGTGAAAGCT  Raphanus sativus cv Early Scarlet Globe
EY938978       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD572024       --> TGAGTTCTTACTTAGGACACAGAAAGATGATGGAGGTgg...........  Raphanus sativus cv Early Scarlet Globe
EY938488       --> TGAGTTCTTACTTAGGACACAGAAAGATGATGGAGGTTGGGGTGAAAGCT  Raphanus sativus cv Early Scarlet Globe
EX750059       --> TGAGTTCTTACTCAGGACACAAAAAGATGATGGAGGTTGGGGTGAAAGCT  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN51301        --> ATCTGTCATGTCCTGAAGAGAGATACATACCATCAGAAGGGAAACAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ATCTGTCATGTCCTGAAGAGAGATACATACCATCAGAAGGGAAACAAACC
EX753615       <-- ATCTGTCATGTCCTGAAGAGAGATACATACCATCAGAAGGGAAACAAACC
FD575754       <-- ATCTGTCATGTCCTGAAGAGAGATACATACCATCAGAAGGGAAACAAACC
EY934616       <-- ATCTGTCATGTCCTGAAGAGAGATACATACCATCAGAAGGGAAACAAACC
EY938978       --> ..................................................
FD533810       --> ..................................................
FD572024       --> ..................................................
EY938488       --> ATCTGTCATGTCCTGAAGAGAGATACATACCATCAGAAGGGAAACAAACC
EX750059       --> ATCTGTCATGTCCTGAAGAGAGATACATACCATCAGAAGGGAAACAAACC

               1001   -   1051
UN51301        --> AACCTTGTGCAAACAGCTTGGGCAATGCTGGCTCTCATTCACGCTGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- AACCTTGTGCAAACAGCTTGGGCAATGCTGGCTCTCATTCACGCTGGACA
EX753615       <-- AACCTTGTGCAAACAGCTTGGGCAATGCTGGCTCTCATTCACGCTGGACA
FD575754       <-- AACCTTGTGCAAACAGCTTGGGCAATGCTGGCTTTCATTCACGCTGGACA
EY934616       <-- AACCTTGTGCAAACAGCTTGGGCAATGCTGGCTCTCATTCACGCTGGACA
EY938978       --> ..................................................
FD533810       --> ..................................................
FD572024       --> ..................................................
EY938488       --> AACCTTGTGCAAACAGCTTGGGCAATGCTGGCTCTCATTCACGCTGGACA
EX750059       --> AACCTTGTGCAAACAGCTTGGGCAATGCTGGCTCTCATTCACGCTGGACA

               1051   -   1101
UN51301        --> GGCCGAGAGAGATCCAATACCTCTTCACCGTGCCGCAAAGCTTATCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- GGCCGAGAGAGATCCAATACCTCTTCACCGTGCCGCAAAGCTTATCATCA
EX753615       <-- GGCCGAGAGAGATCCAATACCTCTTCACCGTGCCGCAAAGCTTATCATCA
FD575754       <-- GGCCGAGAGAGATCCAATACCTCCTCACCGTGCCGCAAAGCTTATCATCA
EY934616       <-- GGCCGAGAGAGATCCAATACCTTTTCACCGTGCCGCAAAGCTTATCATCA
EY938978       --> ..................................................
FD533810       --> ..................................................
FD572024       --> ..................................................
EY938488       --> GGCCGAGAGAGATCCAATACCTCTTCACCGTGCCGCAAAGCTTATCATCA
EX750059       --> GGCCGAGAGAGATCCAATACCTCTTCACCGTGCCGCAAAGCTTATCATCA

               1101   -   1151
UN51301        --> ATTCGCAAATGGAAGATGGAGATTTCCCTCAACAGGAGATAGTAGGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ATTCGCAAATGGAAGATGGAGATTTCCCTCAACAGGAGATAGTAGGAGTA  Raphanus raphanistrum subsp. maritimus
EX753615       <-- ATTCGCAAATGGAAGATGGAGATTTCCCTCAACAGGAGATAGTAGGAGTA  Raphanus raphanistrum subsp. maritimus
FD575754       <-- ATTCGCAAATGGAAGATGGAGATTTCCCTCAACAGGAGATAGTAGGAGTG  Raphanus sativus cv Early Scarlet Globe
EY934616       <-- ATTCGCAAATGGAAGATGGAGATTTCCCTCAACAGGAGATAGTAGGAGTG  Raphanus sativus cv Early Scarlet Globe
EY938978       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD572024       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938488       --> ATTCGCAAATGGAAGATGGAGATTTCCCTCAACAGGAGATAGTAGGAGTG  Raphanus sativus cv Early Scarlet Globe
EX750059       --> ATTCGCAAATGGAAGATGGAGATTTCCCTCAACAGGAGATAGTAGGAGTA  Raphanus raphanistrum subsp. maritimus

               1151   -   1201
UN51301        --> TTCATGAAGAATTGCTTGATACACTATGCTACCTACAGAAACACTTTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- TTCATGAAGAATTGCTTGATACACTATGCTACCTACAGAAACACCTTCCC  Raphanus raphanistrum subsp. maritimus
EX753615       <-- TTCATGAAGAATTGCTTGATACACTATGCTACCTACAGAAACACCTTCCC  Raphanus raphanistrum subsp. maritimus
FD575754       <-- TCCATGAAGAATTGCTTGATACACTATGCTACCTACAGAAACACTTTCCC  Raphanus sativus cv Early Scarlet Globe
EY934616       <-- TTCATGAAGAATTGCTTGATACACTATGCTACCTACAGAAACACTTTCCC  Raphanus sativus cv Early Scarlet Globe
EY938978       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD572024       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938488       --> TTCATGAAGAATTGCTTGATACACTATGCTACCTACAGAAACACTTTCCC  Raphanus sativus cv Early Scarlet Globe
EX750059       --> TTCATGAAGAATTGCTTGATACACTATGCTACCTACAGAAACACCTTCCC  Raphanus raphanistrum subsp. maritimus

               1201   -   1251
UN51301        --> ATTATGGGCGCTTGCTGAGTATCGTAAAGCTGCGTTTCTTAACTCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- ATTATGGGCGCTTGCTGAGTATCGTAAAGCTGCCTTCCTTAACTCATCAA  Raphanus raphanistrum subsp. maritimus
EX753615       <-- ATTATGGGCGCTTGCTGAGTATCGTAAAGCTGCCTTTCTTAACTCATCAA  Raphanus raphanistrum subsp. maritimus
FD575754       <-- ATTATGGGCACTTGCTGAGTATCGTAAAGCTGCGTTTTTTAACTCATCAA  Raphanus sativus cv Early Scarlet Globe
EY934616       <-- ATTATGGGCACTTGCTGAGTATCGTAAAGCTGCGTTTCTTAACTCATCAA  Raphanus sativus cv Early Scarlet Globe
EY938978       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD572024       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938488       --> ATTATGGGCACTTGCTGAGTATCGTAAAGCTGCGTTTCTTAACTCATCAA  Raphanus sativus cv Early Scarlet Globe
EX750059       --> ATTATGGGCGCTTGCTGAGTATCGTAAAGCTGCCTTTCTTAACTCATCAA  Raphanus raphanistrum subsp. maritimus

               1251   -   1301
UN51301        --> CCACATCTACAGCTTCCTAAATAAATGTTCACATGATATTTAAGACAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- CCACATCTACAGCTTCCTAAATAAATGTTCACATAATATTTAAGACAAAA  Raphanus raphanistrum subsp. maritimus
EX753615       <-- CCACATCTACAGCTTCCTAAATAAATGTTCACATAATATTTAAGACAAAA  Raphanus raphanistrum subsp. maritimus
FD575754       <-- CCACATTTACAGCTTCCTAAATAAATGTTCACATGATATTTAAGACAAAA  Raphanus sativus cv Early Scarlet Globe
EY934616       <-- CCACATCTACAGCTTCCTAAATAAATGTTCACATGATATTTAAGACAAAA  Raphanus sativus cv Early Scarlet Globe
EY938978       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD572024       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938488       --> CCACATCTACAGCTTCCTAAATAAATGTTCACATGATATTTAAGAC....  Raphanus sativus cv Early Scarlet Globe
EX750059       --> CCACATCTACAGCTTCCTAAATAAATGTTCACATAATATTTAAGACAAAc  Raphanus raphanistrum subsp. maritimus

               1301   -   1351
UN51301        --> CAAAAGGGGTATTCAGATGTATGTTAAGTATCCACTCAAAAAGTATCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- CAAAAGGGGTATTCAGATGTATGTTAAGTATCCACTCAAAAAGTATCCAT
EX753615       <-- CAAAAGGGGTATTCAGATGTATGTTAAGTATCCACTCAAAAAGTATCCAT
FD575754       <-- CAAAAGGGGTATTCAGATGTATGCTAAGTATCCGCTCAAAAAGTATCCAT
EY934616       <-- CAAAAGGGGTATTCAGATGTATGTTAAGTATCCACTCAAAAAGTATCCAT
EY938978       --> ..................................................
FD533810       --> ..................................................
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> a.................................................

               1351   -   1401
UN51301        --> TTGAACAAAATAACAGATGCATGTTTATAAAACAAAGTAAACAAAAAAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- TTGAACAAAATAACAGATGCATGTTTATAAAACAAAGTAAACAAAAAAA-
EX753615       <-- TTGAACAAAATAACAGATGCATGTTTATAAAACAAAGTAAACAAAAAAA-
FD575754       <-- TTGAACAAAATAACAGATGCATGTTTATAAAACAAAGTAAACAAAAAAA-
EY934616       <-- TTGAACAAAATAACAGATGCATGTTTATAAAACAAAGTAAACAAAAAAAA
EY938978       --> ..................................................
FD533810       --> ..................................................
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               1401   -   1451
UN51301        --> TATTTTGTGAAATAATTAACTATTTCGCCTTTTGTGTTTATCAGATTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529893       <-- TATTTTGTGAAATAATTAACTATTTCGCC.....................
EX753615       <-- TATTTTGTGAAATAATTAACTATTTCGCCTTTTGTGTTTATCAGATTTAT
FD575754       <-- TATTTTGTGAgat.....................................
EY934616       <-- TATTTTGTGAAATAATTAACTATTTCGCCc....................
EY938978       --> ..................................................
FD533810       --> ..................................................
FD572024       --> ..................................................
EY938488       --> ..................................................
EX750059       --> ..................................................

               1451   -   1501
UN51301        --> AAACATCTC
                   ~~~~~~~~~
FD529893       <-- .........
EX753615       <-- AAACATCTC
FD575754       <-- .........
EY934616       <-- .........
EY938978       --> .........
FD533810       --> .........
FD572024       --> .........
EY938488       --> .........
EX750059       --> .........