Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN51418

               1      -     51
UN51418        --> GGGCGCTATCGCTATTGTTGTAGATCTGCTTCTTTTTTTCCAACCCTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- ................................TTTTTTTCCAACCCTAAT
FD582188       <-- ................................TTTTTTTCCAACCCTAAT
FD943469       <-- ................................TTTTTTTCCAACCCTAAT
FD982550       <-- ................................TTTTTTTCCAACCCTAAT
EW719739       <-- .......................................CCAACCCTAAT
FD554945       <-- ..................................................
EX747307       --> GGGCGCTATCGCTATTGTTGTAGATCTGCTTCTTTTTTTCCAACCCTAAT
EY948350       --> GGGCGCTATCGCTATTGTTGTAGATCTGCTTCTTTTTTTCCAACCCTAAT
FD577975       --> GGGCGCTATCGCTATTGTTGTAGATCTGCTTCTTTTTTTCCAACCCTAAT
EY922526       --> ................................TTTTTTTCCAACCCTAAT
FD947540       --> ................................TTTTTTTCCAACCCTAAT
FD986273       --> ................................TTTTTTTCCAACCCTAAT
EW715112       --> .......................................CCAACCCTAAT
EY923570       --> ..................................................

               51     -    101
UN51418        --> CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
FD582188       <-- CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
FD943469       <-- CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
FD982550       <-- CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
EW719739       <-- CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
FD554945       <-- ..................................................
EX747307       --> CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
EY948350       --> CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
FD577975       --> CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
EY922526       --> CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
FD947540       --> CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
FD986273       --> CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
EW715112       --> CGAGAACCGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC
EY923570       --> ......ggGCCGATACGTAAAGAGATCAAAGAAAAGGGTTTAATCATGGC

               101    -    151
UN51418        --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
FD582188       <-- CATTCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCACGCGCCGTA
FD943469       <-- CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
FD982550       <-- CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
EW719739       <-- CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
FD554945       <-- ..................................................
EX747307       --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
EY948350       --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
FD577975       --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCACGCGCCGTA
EY922526       --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
FD947540       --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
FD986273       --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
EW715112       --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA
EY923570       --> CAATCAGAAAGGCGCTCTCGAAGGCTTTTACAGACTGATCATGCGCCGTA

               151    -    201
UN51418        --> ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTTTTCGGCGAACGG
FD582188       <-- ACTCCGCCTACGTCTCCTTCATCATCGCCGGCGCTTTTTTCGGCGAACGG
FD943469       <-- ACTCCGTCCACGTCTCCTTCATCATCGCCGGCGCTTTTTTCGGCGAACGG
FD982550       <-- ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTTTTCGGCGAATGG
EW719739       <-- ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG
FD554945       <-- ..................................TTTTTTCGGCGAACGG
EX747307       --> ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG
EY948350       --> ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG
FD577975       --> ACTCCGCCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG
EY922526       --> ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG
FD947540       --> ACTCCGTCCACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG
FD986273       --> ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAATGG
EW715112       --> ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG
EY923570       --> ACTCCGTCTACGTCTCCTTCATCATCGCCGGCGCTTTCTTCGGCGAACGG

               201    -    251
UN51418        --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
FD582188       <-- GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
FD943469       <-- GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
FD982550       <-- GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
EW719739       <-- GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
FD554945       <-- GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
EX747307       --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
EY948350       --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
FD577975       --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
EY922526       --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
FD947540       --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
FD986273       --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
EW715112       --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA
EY923570       --> GCTGTGGATTACGGTGTTCATAAGCTCTGGGAAAGCAAGAATGTTGGGAA

               251    -    301
UN51418        --> ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
FD582188       <-- ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
FD943469       <-- ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
FD982550       <-- ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
EW719739       <-- ACGGTACGAAGACATCTCTGTGTTAGGTCAAAGGCCTATTGAAGAATGAG
FD554945       <-- ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
EX747307       --> ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
EY948350       --> ACGGTACGAAGACATCTCTGTGCTGGGTCAAAGGCCTATTGAAGAATGAG
FD577975       --> ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
EY922526       --> ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
FD947540       --> ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
FD986273       --> ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG
EW715112       --> ACGGTACGAAGACATCTCTGTGTTAGGTCAAAGGCCTATTGAAGAATGAG
EY923570       --> ACGGTACGAAGACATCTCTGTGTTGGGTCAAAGGCCTATTGAAGAATGAG

               301    -    351
UN51418        --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
FD582188       <-- ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
FD943469       <-- ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
FD982550       <-- ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
EW719739       <-- ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
FD554945       <-- ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
EX747307       --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
EY948350       --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTCC
FD577975       --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
EY922526       --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
FD947540       --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
FD986273       --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
EW715112       --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAATGAAACTTTC
EY923570       --> ATTTCTCCTTTACGAATCTTCTCAGACTAAAAGAAGGAAGTGAAACTTTC

               351    -    401
UN51418        --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
FD582188       <-- CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
FD943469       <-- CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
FD982550       <-- CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
EW719739       <-- CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
FD554945       <-- CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATTAT
EX747307       --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
EY948350       --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
FD577975       --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
EY922526       --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
FD947540       --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
FD986273       --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
EW715112       --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT
EY923570       --> CTTGTTGTTTTGCAAGTCGCTTCTCTTGTTCAATAAATCATTGGGATGAT

               401    -    451
UN51418        --> TTTAATACTTTCACCTAAAGCACGCTTACTGATCTGATTAATTGAATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- TTTAATACTTTCACCTAAAGCACGCTTACTGATCTGATTAATTGAATTTT  Raphanus raphanistrum subsp. landra
FD582188       <-- TTTAATACTTTCACCTAAAGCACGCTTACTGATCTGATTAATTGAATTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD943469       <-- TTTAATACTTTCACCTAAAGCACGCTTACTGATCTGATTAATTGAATTTT  Raphanus sativus cv Early Scarlet Globe
FD982550       <-- TTTAATACTTTCACCTAAAGCACGCTTACTGAACTGATTAATTGAATTTT  Raphanus raphanistrum subsp. landra
EW719739       <-- TTTAATACTTTCACCTAAAGCACGCTTACTGAACTGATTAATTGAATTTT  Raphanus sativus var. oleiformis
FD554945       <-- TTTAATACTTTCACCTAAAGCACGCTTACCGTTCTGATTAATTGAATTTT  Raphanus raphanistrum subsp. landra
EX747307       --> TTTAATACTTTCACCTAAAGCACGCTTACTGAACTGATTAATTGAATTTT  Raphanus raphanistrum subsp. maritimus
EY948350       --> TTTAATACTTTCACCTAAAGCACGCTTACTGATCTGAT............  Raphanus sativus cv Rat-Tail Radish #3870
FD577975       --> TTTAATACTTTCACCTAAAGCACGCTTACTGATCTGATTAATTGAATTTT  Raphanus sativus cv Rat-Tail Radish #3870
EY922526       --> TTTAATACTTTCACCTAAAGCACGCTTACTGATCTGATTAATTGAATTTT  Raphanus raphanistrum subsp. landra
FD947540       --> TTTAATACTTTCACCTAAAGCACGCTTACTGATCTGATTAATTGAATTTT  Raphanus sativus cv Early Scarlet Globe
FD986273       --> TTTAATACTTTCACCTAAAGCACGCTTACTGAACTGATTAATTGAATTTT  Raphanus raphanistrum subsp. landra
EW715112       --> TTTAATACTTTCACCTAAAGCACGCTTACTGAACTGATTAATTGAATTTT  Raphanus sativus var. oleiformis
EY923570       --> TTTAATACTTTCACCTAAAGCACGCTTACTGAACTGATTAATTGAATTTT  Raphanus raphanistrum subsp. landra

               451    -    501
UN51418        --> CTGCATTGTGGTATATGATAGCATTTATCACACGTGTCGTTTTTTGTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- CTGCATTGTGGTATATGATAGCATTTATCACACGTGTCGTTTTTTGTGCA
FD582188       <-- CTGCATTGTGGT......................................
FD943469       <-- CTGCATTGTGG.......................................
FD982550       <-- CTGCATTGTGGTATATGATAGCATTT........................
EW719739       <-- CTGCATTGTGGcg.....................................
FD554945       <-- CTGCATTGTGGTATATGATAGCATTTATCACACGTGTCGTTTTTTGTGC.
EX747307       --> CTGCATTGTGGTATATGATAGCATTTATCACACGTGTCGTTTTTTGTG..
EY948350       --> ..................................................
FD577975       --> CTGCATTGTGGT......................................
EY922526       --> CTGCATTGTGGTATATGATAGCATTTATCACACGTGTCGTTTTTTGTGCA
FD947540       --> CTGCATTGTGG.......................................
FD986273       --> CTGCATTGTGGTATATGATAGCATTT........................
EW715112       --> CTGCATTGTGGcg.....................................
EY923570       --> CTGCATTGTGGTATATGATAGCATTTATCACACGTGTCGTTTTTTGTGCA

               501    -    551
UN51418        --> TTCCATAGTATGTTACATTTCAAAATGCCCATAAATGAATCTTCTACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY918471       <-- TTCCATAGTATGTTACATTTCAAAATG.......................
FD582188       <-- ..................................................
FD943469       <-- ..................................................
FD982550       <-- ..................................................
EW719739       <-- ..................................................
FD554945       <-- ..................................................
EX747307       --> ..................................................
EY948350       --> ..................................................
FD577975       --> ..................................................
EY922526       --> TTCCATAGTATGTTACATTTCAAAATG.......................
FD947540       --> ..................................................
FD986273       --> ..................................................
EW715112       --> ..................................................
EY923570       --> TTCCATAGTATGTTACATTTCAAAATGCCCATAAATGAATCTTCTACACT

               551    -    601
UN51418        --> CCC
                   ~~~
EY918471       <-- ...
FD582188       <-- ...
FD943469       <-- ...
FD982550       <-- ...
EW719739       <-- ...
FD554945       <-- ...
EX747307       --> ...
EY948350       --> ...
FD577975       --> ...
EY922526       --> ...
FD947540       --> ...
FD986273       --> ...
EW715112       --> ...
EY923570       --> CCC