0      -     50
UN51446        --> .CGTCTAACAACAATATCTTTATTATTAAAACACCAAACTCCTTAAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- .CGTCTAACAACAAGATCTTTATTATTAAAACACCAAACTCCTTAAAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY898696       <-- ..GTCTAACAACAAGATCTTTATTATTAAAACACCAAACTCCTTAAAACA  Raphanus raphanistrum subsp. maritimus
EX896549       <-- ......cACAACAATATCTTTATTATTAAAACACCAAACTCCTTAAAACA  Raphanus sativus cv Early Scarlet Globe
FD949982       <-- ......cACAACAATATCTTTATTATTAAAACACCAAACTCCTTAAAACA  Raphanus sativus cv Early Scarlet Globe
EY896790       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894675       --> ..GTCTAACAACAAGATCTTTATTATTAAAACACCAAACTCCTTAAAACA  Raphanus raphanistrum subsp. maritimus
EY893257       --> ccaTCTAACAACAAGATCTTTATTATTAAAACACCAAACTCCTTAAAACA  Raphanus raphanistrum subsp. maritimus
FD945558       --> ......cACAACAATATCTTTATTATTAAAACACCAAACTCCTTAAAACA  Raphanus sativus cv Early Scarlet Globe
FY435491       --> ......cACAACAATATCTTTATTATTAAAACACCAAACTCCTTAAAACA  Raphanus sativus cv GSK3-1

               50     -    100
UN51446        --> ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY898696       <-- ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTG  Raphanus raphanistrum subsp. maritimus
EX896549       <-- ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTC  Raphanus sativus cv Early Scarlet Globe
FD949982       <-- ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTC  Raphanus sativus cv Early Scarlet Globe
EY896790       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894675       --> ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTG  Raphanus raphanistrum subsp. maritimus
EY893257       --> ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTG  Raphanus raphanistrum subsp. maritimus
FD945558       --> ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTC  Raphanus sativus cv Early Scarlet Globe
FY435491       --> ACAAACACTAATCAGTTTACATACGACAAAGCCACAAAAGCAACTCACTC  Raphanus sativus cv GSK3-1

               100    -    150
UN51446        --> ATGATAAACTGACAATTAAGACAAAACTAGAAACCCCAAAACACCATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- ATGATAAACTGACAATTAAGACAAAACTAGAAACCCCAAAACACCATATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY898696       <-- ATGATAAACTGACAATTAAGACAAAACTAGAAACCCCAAAACACCATATC  Raphanus raphanistrum subsp. maritimus
EX896549       <-- ATGATAA-CTGACAATTAAGACAAAACTAGAAACCCCAAAACACCATATC  Raphanus sativus cv Early Scarlet Globe
FD949982       <-- ATGATAA-CTGACAATTAAGACAAAACTAGAAACCCCAAAACACCATATC  Raphanus sativus cv Early Scarlet Globe
EY896790       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894675       --> ATGATAAACTGACAATTAAGACAAAACTAGAAACCCCAAAACACCATATC  Raphanus raphanistrum subsp. maritimus
EY893257       --> ATGATAAACTGACAATTAAGACAAAACTAGAAACCCCAAAACACCATATC  Raphanus raphanistrum subsp. maritimus
FD945558       --> ATGATAA-CTGACAATTAAGACAAAACTAGAAACCCCAAAACACCATATC  Raphanus sativus cv Early Scarlet Globe
FY435491       --> ATGATAA-CTGACAATTATGACAAAACTAGAAACCCCAAAACACCATATC  Raphanus sativus cv GSK3-1

               150    -    200
UN51446        --> ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC
EY898696       <-- ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC
EX896549       <-- ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC
FD949982       <-- ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC
EY896790       <-- ..................................................
EY894675       --> ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC
EY893257       --> ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC
FD945558       --> ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC
FY435491       --> ATCAAGCCTCTCGTTGGTCGGACTATTCCCACCGTGAACCAACAAACCTC

               200    -    250
UN51446        --> TCTCACCATTCACCACCGCAACAGCAAACGCGCACCACCCGCGCGGGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- TCTCACCATTCACCACCGCAACAGCAAACGCACACCACCCGCGCGGGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY898696       <-- TCTCACCATTCACCACCGCAACAGCAAACGCACACCACCCGCGCGGGCTC  Raphanus raphanistrum subsp. maritimus
EX896549       <-- TCTCACCATTCACCACCGCAACAGCAAACGCGCACCACCCGCGCGGGCTC  Raphanus sativus cv Early Scarlet Globe
FD949982       <-- TCTCACCATTCACCACCGCAACAGCAAACGCGCACCACCCGCGCGGGCTC  Raphanus sativus cv Early Scarlet Globe
EY896790       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894675       --> TCTCACCATTCACCACCGCAACAGCAAACGCACACCACCCGCGCGGGCTC  Raphanus raphanistrum subsp. maritimus
EY893257       --> TCTCACCATTCACCACCGCAACAGCAAACGCACACCACCCGCGCGGGCTC  Raphanus raphanistrum subsp. maritimus
FD945558       --> TCTCACCATTCACCACCGCAACAGCAAACGCGCACCACCCGCGCGGGCTC  Raphanus sativus cv Early Scarlet Globe
FY435491       --> TCTCACCATTCACCACCGCAACAGCAAACGCGCACCACCCGCGCGGGCTC  Raphanus sativus cv GSK3-1

               250    -    300
UN51446        --> GGCTTCTTGTCTCCCTCATCAGTGCTACCATCCAAAACCTTCTCCCACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- GGCTTCTTGTCTCCCTCATCAGTACTACCATCCAAAACCTTCTCCCACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY898696       <-- GGCTTCTTGTCTCCCTCATCAGTACTACCATCCAAAACCTTCTCCCACAC  Raphanus raphanistrum subsp. maritimus
EX896549       <-- GGCTTCTTGTCACCCTCATCAGTGCTACCATCCAAAACCTTCTCCCACAC  Raphanus sativus cv Early Scarlet Globe
FD949982       <-- GGCTTCTTGTCACCCTCATCAGTGCTACCATCCAAAACCTTCTCCCACAC  Raphanus sativus cv Early Scarlet Globe
EY896790       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY894675       --> GGCTTCTTGTCTCCCTCATCAGTACTACCATCCAAAACCTTCTCCCACAC  Raphanus raphanistrum subsp. maritimus
EY893257       --> GGCTTCTTGTCTCCCTCATCAGTACTACCATCCAAAACCTTCTCCCACAC  Raphanus raphanistrum subsp. maritimus
FD945558       --> GGCTTCTTGTCACCCTCATCAGTGCTACCATCCAAAACCTTCTCCCACAC  Raphanus sativus cv Early Scarlet Globe
FY435491       --> GGCTTCTTGTCTCCCTCATCAGTGCTACCATCCAAAACCTTCTCCCACAC  Raphanus sativus cv GSK3-1

               300    -    350
UN51446        --> CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
EY898696       <-- CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
EX896549       <-- CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
FD949982       <-- CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
EY896790       <-- .............TCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
EY894675       --> CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
EY893257       --> CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
FD945558       --> CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC
FY435491       --> CAACGTCTCCGTATCAAACCTATAAACATCTCCAGACAACTTCCCAGCTC

               350    -    400
UN51446        --> CCATATGCATCAGCACATGCGGCTCCTCCTCCCCACCATATATCACAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- CCATATGCATCAGCACATGCGGCTCCTCCTCCCCACCATATATCACAATA
EY898696       <-- CCATATGCATCAGCACATGCGGCTCCTCCTCCCCACCATATATCACAATA
EX896549       <-- CCATATGCATCAGCACATGCGGCTCCTCCTC...................
FD949982       <-- CCATATGCATCAGCACATGCGGCTCCTCCTCCCCACCATATATCACAATA
EY896790       <-- CCATACGCATCAGCACATGCGGCTCCTCCTCCCCACCATATATCACAATA
EY894675       --> CCATATGCATCAGCACATGCGGCTCCTCCTCCCCACCATATATCACAATA
EY893257       --> CCATATGCATCAGCACATGCGGCTCCTCCTCCCCACCATATATCACAATA
FD945558       --> CCATATGCATCAGCACATGCGGCTCCTCCTCCCCACCATATATCACAATA
FY435491       --> CCATATGCATCAGCACATGCGGCTCTTCCTCCCCACCATATATCACAATA

               400    -    450
UN51446        --> TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC
EY898696       <-- TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC
EX896549       <-- ..................................................
FD949982       <-- TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC
EY896790       <-- TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC
EY894675       --> TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC
EY893257       --> TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC
FD945558       --> TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC
FY435491       --> TACTTCCCTGAAGAAACCGCCGGAAACACGCTTCTCGCCGGAGGCACATC

               450    -    500
UN51446        --> CCCGGTCGTCTCCACGGCGGTCCACCGACCACTAGCCAGATCAAAGCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- ..................................................
EY898696       <-- ..................................................
EX896549       <-- ..................................................
FD949982       <-- ..................................................
EY896790       <-- CCCGGTCGTCTCCACGGCGGTCCACCGACCACTAGCCAGATCAAAGCAAT
EY894675       --> ..................................................
EY893257       --> CCCGGTCGTCTCCACGGCGGTCCACCGACCACTAGCCAGATCAAAGCAAT
FD945558       --> ..................................................
FY435491       --> CCCGGTCGTCTCCACGGCGGTCCACCGACCACTAGCC.............

               500    -    550
UN51446        --> GGATATCACCCAATTCATTACCGTCGAAACCAAACAAAACCCAAACTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- ..................................................
EY898696       <-- ..................................................
EX896549       <-- ..................................................
FD949982       <-- ..................................................
EY896790       <-- GGATATCACCCAATTCATTACCGTCGAAACCAAACAAAACCCAAACTTTC
EY894675       --> ..................................................
EY893257       --> GGATATCACCCAATTCATTACCGTCGAAACCAAACAAAACCCAAACTTTC
FD945558       --> ..................................................
FY435491       --> ..................................................

               550    -    600
UN51446        --> CGGTCCACAACCACAAGCCCCGGCGCGCCCCTCCCCTTGCAAGCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX765725       <-- ...............................................
EY898696       <-- ...............................................
EX896549       <-- ...............................................
FD949982       <-- ...............................................
EY896790       <-- CGGTCCACAACCACAAGCCCCGGCGCGCCCCTCCCCTTGCAAGCCTC
EY894675       --> ...............................................
EY893257       --> CGGTCCACAACCACAAGCCCCGGCGCGCCCCTCCCCTTGCAAGCCTC
FD945558       --> ...............................................
FY435491       --> ...............................................