1      -     51
UN51531        --> AAAAAAAAAGTCTTAGGTAGGTATATACCGATGATTTGGTTAATTTGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- ..................................................
FD546041       --> AAAAAAAAAGTCTTAGGTAGGTATATACCGATGATTTGGTTAATTTGGAC
FD547442       --> ..................................................
EY918255       --> ..................................................
EY918381       --> ..................................................
EY936741       --> ..................................................
EW729170       --> ..................................................

               51     -    101
UN51531        --> CAAATCCCATTGGTAAATATACTAATGCCAGTTATAATGATAACCACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- ..................................................
FD546041       --> CAAATCCCATTGGTAAATATACTAATGCCAGTTATAATGATAACCACATC
FD547442       --> .................................ATAATGATAACCACATC
EY918255       --> ...................................AATGATAACCACATC
EY918381       --> ......................................GATAACCACATC
EY936741       --> ..................................................
EW729170       --> ..................................................

               101    -    151
UN51531        --> ATTTTAATAATTTTACAAAAAAAATTTGTACACTGGTTATCATTTCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- ..................................................
FD546041       --> ATTTTAATAATTTTACAAAAAAAATTTGTACACTGGTTATCATTTCCTTG
FD547442       --> ATTTTAATAATTTTACAAAAAAAATTTGTACACTGGTTATCATTTCCTTG
EY918255       --> ATTTTAATAAATTTACAGAAAAAATTTGTACACTGGTTATCATTTCCTTG
EY918381       --> ATTTTAATAAATTTACAAAAAAAATTTGTACACTGGTTACCATTTCCTTG
EY936741       --> ...........................GTACACTGGTTATCATTTCCTTG
EW729170       --> ..................................................

               151    -    201
UN51531        --> TAACATGTCGTATATTCATAAAAATGATTATGAAACATGTAGTTTAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- ...CATGTCGTACATTCATAGAAATGATTATGAAACATGTAGTTTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546041       --> TAACATGTCGTACATTCATAAAAATGATTATGAAACATGTATTTTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547442       --> TAACATGTCGTACATTCATAAAAATGATTATGAAACATGTAGTTTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918255       --> TAACATGTCGTATATTCATAAAAATGATTATGAAACATGTAGTTTAGGAT  Raphanus raphanistrum subsp. landra
EY918381       --> TAACATGTCGTATATTCATAAAAATGATTATGAAACATGTAGTTTAGGAT  Raphanus raphanistrum subsp. landra
EY936741       --> TAACATGTCGTATATTCATAGAAATGATTATGAAACATGTAGTTTAGGAT  Raphanus sativus cv Early Scarlet Globe
EW729170       --> ..ACATGTCGTATATTCATAAAAATGATTATGAAACATGTAGTTTAGGAT  Raphanus sativus cv Early Scarlet Globe

               201    -    251
UN51531        --> AAATTAGGAATAATTTATGGAACCCAAACTACTCCATTCAGCTATACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- AAATTAGGAATAATTTACGGAACCCAAACTACTCCATCCAGCTATACCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546041       --> AAATTAGGAATAATTTACGGAACCCAAACTACTCCATCCAGCTATACCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547442       --> AAATTAGGAATAATTTACGGAACCCAAACTACTCTATTCAGCTATACCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918255       --> AAATTAGGAATAATTTATGGAACCCAAACTACTCCATTCGGCTATACCAT  Raphanus raphanistrum subsp. landra
EY918381       --> AAATTAGGAATAATTTATGGAACCCAAACTACTCCATTCAGCTATACCAT  Raphanus raphanistrum subsp. landra
EY936741       --> AAATTAGGAATAATTTATGGAACCCAAACTACTCCATTCAGCTATACCAT  Raphanus sativus cv Early Scarlet Globe
EW729170       --> AAATTAGGAATAATTTATGGAACCCAAACTACTCCATTCAGCTATACCAT  Raphanus sativus cv Early Scarlet Globe

               251    -    301
UN51531        --> GCGGGAGGTTTATTCTCTCCAGCTGGTTTATCCGTTGATGCTCCAACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- GCGGGAGGTTTATTCTCTCCAGCTGGTTTATCCGTTGATGCTCCAACTGG
FD546041       --> GCGGGAGGTTTATTCTCTCCAGCTGGTTTATCCGTTGATGCTCCAACTGG
FD547442       --> GCGGGAGGTTTATTCTCTCCAGCTGGTTTATCCGTTGATGCTCCAACTGG
EY918255       --> GCGGGAGGTTTATTCTCTCCAGCTGGTTTATCCGTTGATGCTCCAACTGG
EY918381       --> GCGGGAGGTTTATTCTCTCCAGCTGGTTTATCCGTTGATGCTCCAACTGG
EY936741       --> GCGGGAGGTTTATTCTCTCCAGCTGGTTTATCCGTTGATGCTCCAACTGG
EW729170       --> GCGGGAGGTTTATTTTCTCCAGCTGGTTTATCCGTTGATGCTCCAACTGG

               301    -    351
UN51531        --> TTTATTTTTTTGGTTTTTCAGCCGGTTTATTTGCTGCCCCCCCAGCAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- TTTATTTTTTTGGTTTTTCAGCCGGTTTATTTGCTGCCCCGCCAGCAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546041       --> TTTATTTTTTTGGTTTTTCACCCGGTTTATTTGCTGCCCCCCCAGCAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547442       --> TTTATTTTTTTGGTTTTTCACCCGGTTTATTTGCTGCCCCCCCAGCAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918255       --> TTTATTTTTTTGGTTTTTCACCCGGTTTATTTGCTGCCCCCCCAGCAGGT  Raphanus raphanistrum subsp. landra
EY918381       --> TTTATTTTTTTGGTTTTTCAGCCGGTTTATTTGCCGCCCCCCCAGCAGGT  Raphanus raphanistrum subsp. landra
EY936741       --> TTTATTTTTT-GGTTTTTCAGCCGGTTTATTTGCTGCCCCGCCAGCAGGT  Raphanus sativus cv Early Scarlet Globe
EW729170       --> TTTATTTTTTTGGTTTTTCAGCCGGTTTATTTGCTGCCCCGCCAGCAGGT  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN51531        --> TTATTTGCTGCCCCTCCGGTCGGTTTATCTGCTGGTTTATCTGTTGGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- TTATTTGCTGCCCCTCCGGTCGGTTTATCTGCTGGTTTATCTGTTGGTCC
FD546041       --> TTATTTGCTGCCCCTCCGGTCGGTTTATCTGCTGGTTTATCTGTTGGTCC
FD547442       --> TTATTTGCTGCCCCTCCGGTCGGTTTATCTGCTGGTTTATCTGTTGGTCC
EY918255       --> TTATTTGCTGCCCCTCCGGTCGGTTTATCTGCTGGTTTATCTGTTGGTCC
EY918381       --> TTATTTGCTGCCCCTCCGGTCGGTTTATCTGCTGGTTTATCTGTTGGTCC
EY936741       --> TTATTTGCTGCTCCTCCGGTCGGTTTGTCTGCTGGTTTATCTGTTGGTCC
EW729170       --> TTATTTGCTGCTCCTCCGGTCGGTTTATCTGCTGGTTTATCTGTTGGTCC

               401    -    451
UN51531        --> TCCAGCAGGTTTATCTGCTGGTCCTCCAGCTGGTTTATTTCCTGGTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- TCCAGCAGGTTTATCTGCTGGTCCTCCAGCTGGTTTATTTCCTGGTTTAT
FD546041       --> TCCAGCAGGTTTATCTGCTGGTCCTCCAGCTGGTTTATTTCCTGGTTTAT
FD547442       --> TCCAGCAGGTTTATCTGCTGGTCCTCCAGCTGGTTTATTTCCTGGTTTAT
EY918255       --> TCCAGCAGGTTTATCTGCTGGTCCTCCAGCTGGTTTATTTCCTGGTTTAT
EY918381       --> TCCAGCAGGTTTATCTGCTGGTCCTCCAGCTGGTTTATTTCCTGGTTTAT
EY936741       --> TCCAGCAGGTTTATCTGCTGGTCCTCCAGCTGGTTTATTTCCTGGTTTAT
EW729170       --> TCCAGCAAATTTATCTGCTGGTCCTCCAGCTGGTTTATTTCCTGGTTTAT

               451    -    501
UN51531        --> CTGTTGGTCCTCCAGCGGGTTTATCTTTTGGTTTATGAGCTGGTTCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- CTGTTGGTCCTCCAGCGGGTTTATCTTTTGGTTTATGAGCTGGTTCTCCG
FD546041       --> CTGTTGGTC.........................................
FD547442       --> CTGTTGGTCCTCCAGCGGGTTTATCTTTTGGTTTATGAACTGGTTCTCCG
EY918255       --> CTGTTGGTCCTCCAGCGGGTTTATCTTTTGGTTTGTGAGCTGGTTCTCCA
EY918381       --> CTGTTGGTCCTCCAGCGGGTTTATCTTTTGGTTTATGAGCTGGTTCTCCA
EY936741       --> CTGTTGGTCCTCCAGCGGGTTTATCTTTTGGTTTATGAGCTGGTTCTCCA
EW729170       --> CTGTTGGTCCTCCAGCGGGTTTATCTTTTGGTTTATGAGCTGGTTCTCCA

               501    -    551
UN51531        --> GCTGGTTTACTTCCTGGTTTATTTGTTGGTCCTCCAGCAGGTTTATCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- GCTGGTTTACTTCCTGGTTTATTTGTTGGTCCTCCAGCAGGTTTATCTGG
FD546041       --> ..................................................
FD547442       --> GCTGGTTTACTTCCTGGTTTATTTGTTGGT....................
EY918255       --> GCTGGTTTACTTCCTGGTTTATTTGTTGGTCCTCCAGCAGGTTTATCTGG
EY918381       --> GCTGGTTTACTTCCTGGTTTATTTGTTGGTCCTCCAGCAGGTTTATCTGG
EY936741       --> GCTGGTTTACTTCCTGGTTTATTTGTTGGTCCTCCAGCAGGTTTATCTGG
EW729170       --> GCTGGTTTACTTCCTGGTTTATTTGTTGGTCCTCCAGCAGGTTTATCTGG

               551    -    601
UN51531        --> TTTATGTGCTGGTCCTCCAGCTGGTTTACTTCCTGGTTTATCTGTTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- TTTATGTGCTGGTCCTCCAGCTGGTTTACTTCCTGGTTTATCTGTTGCTC
FD546041       --> ..................................................
FD547442       --> ..................................................
EY918255       --> TTTATGTGCTGGTCCTCCAGCTGGTTTACTCCCTGGTTTATCTGTTGCTT
EY918381       --> TTTATGTGCTGGTCCTCCAGCTGGTTTACTTCCTGGTTTATCTGTTGCTT
EY936741       --> TTTATGTGCTGGTCATCCAGCTGGTTTACTTCCTGGTTTATCTGTTGCTT
EW729170       --> TTTATGTGCTGGTCCTCCAGCTGGTTTACTTCCTGGTTTATCTGTTGCTT

               601    -    651
UN51531        --> CTCCATCCGGTTT-ACCTCCTGGCTTATCTGCTGCTCCTGCAGCCGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- CTCCATCCGGTTT-ACCTCCTGGCTTATCTGCTGCTCCTGCAGCCGGTTT
FD546041       --> ..................................................
FD547442       --> ..................................................
EY918255       --> CTCCATCCGGTTT-ACC.................................
EY918381       --> CTCCATCCGGTTT-ACCTCCTGGCTTATCTGCTGCTCCTGCAGCCGGTTT
EY936741       --> CTCCATCCGGTTT-ACCTCCTGGCTTATCTGCTGCTCCTGCAGCCGGTTT
EW729170       --> CTCCATCCCGTTTTACCTCCTGGCTTATCTGCTGCTCC............

               651    -    701
UN51531        --> ACCTCCTGGCTTATCTGCTGCTCCTCCAGCCGGTTTGTCTTCTGGCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- ACCCCCTGGCTTATCTGCTGCTCCTCCAGCCGGTTTGTCTTCTGGCTTAT
FD546041       --> ..................................................
FD547442       --> ..................................................
EY918255       --> ..................................................
EY918381       --> ACCTCCTGGCTTATCTGCT...............................
EY936741       --> ACCTCCTGGCTTATCTGCTGCTCCTCCAGCCGGTTTATCTTCTGGCTTAT
EW729170       --> ..................................................

               701    -    751
UN51531        --> CGGTTGCTCCTCCAGCTGGTTTATCATTTGGCTTACTTGTTGCTTCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- CGGTTGCTCCTCCAGCTGGTTTATCATTTGGCTTACTTGTTGCTTCTCCA
FD546041       --> ..................................................
FD547442       --> ..................................................
EY918255       --> ..................................................
EY918381       --> ..................................................
EY936741       --> CGGTTGCTCCTCCAGCTGGTTTATCATTTGGCATACTTGTTGCTTCTCCA
EW729170       --> ..................................................

               751    -    801
UN51531        --> GCTGGTTTATCATTTGGTTTATCTGTTGCTCCACCAGCTGGTTTAGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- GCTGGTTTATCATTTGGTTTATCTGTTGCTCCACCAGCTGGTTTAGCTGC
FD546041       --> ..................................................
FD547442       --> ..................................................
EY918255       --> ..................................................
EY918381       --> ..................................................
EY936741       --> GCTGGTTTATCATTTGGTTTATCTGTTGCTCC..................
EW729170       --> ..................................................

               801    -    851
UN51531        --> TTCGGTGGGTGGAGCTCCTGCTGGAGGTGGATTATTCTTCGGGTGTACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD550046       <-- TTCGGTGGGTGGAGCTCCTGCTGGAGGTGGATTATTCTTCGGGTGTACTC
FD546041       --> ..................................................
FD547442       --> ..................................................
EY918255       --> ..................................................
EY918381       --> ..................................................
EY936741       --> ..................................................
EW729170       --> ..................................................

               851    -    901
UN51531        --> CCATTCC
                   ~~~~~~~
FD550046       <-- CCATTCC
FD546041       --> .......
FD547442       --> .......
EY918255       --> .......
EY918381       --> .......
EY936741       --> .......
EW729170       --> .......