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Simple sequence repeat (SSR)
>UN00546
GAACAGATATGAATTAAATTAAGTTCTTAGCATTCCTCATATCATATAGTTTTCATGTCCCACATGACCAAATCAAATATTCAATTGTCTGAAA
CTATGAATGTACAAATTACGAAAGAAAACGATAAATAAAAAAAATAAAATAAAAAGAATTGAGATTTCATTTCATTTCCTCATCTGGGAGCGTA
GGAGACGGTTATATCCGTTGGCCGTTTCATGTTCGTCGCCCACTTCTCCGATTCTAAATACAGCTGCGATATCTTCCCGGCGACTCTTCCCATC
TCCGGCCGATTCACCGGATCCTCCACCACGCATTCCAACGCCAGCCGCGTCAGCTTCTCCACCACCGTCACCGGAAACGAATCCCCTAATCTCC
GATCAATCCACCTCCTCAACCGCCCCTCCGTATCTCCTCCGTCGATCACCACCGCTTTCGCGGTTTCGATCACCGAAGTCCGCTCAAAATCTCC
GGTGGCTTTATCGTACCGATACTTCAGCGGCTCCTCCCCGGAGAGAAGCTCGAGCATCACGACTCCGAACGCGAACACGTCGGATTCCCGAGTG
GCGACCCCGGTGGCTTGAAACTCTGGCGACATGTAGCCTCTCACTCCTTCGAATCTCTTCGATCGGTCTCTCTCCGGCGTCGTCGTCGTCGTTT
CGTTCGTTTCCCCGCATAGCTGCGCGGTCCCGAAGTGGCAGATCTTCGCGTTGTGATCCGGCTCCGTCACGATCACGGCCGAGCTCTTGATGTG
GTTATGAACGAGATTCTCGATCTTTAATCCCGTCTTGTTGTGGATGTAGTCAAGCCCGTGGGCCAGATCCGTCGCGATTTGGATCCTCGAGGCC
CAACTCGACAGCACTGTGAAATTAGGGTTCCTAGGGTTCCTCAAGCAATCAGCGAGGGAGGCTCCGTTGACGTACTCGTAGACTAGGTAGATGT
GATCGCTTCCTCCGGAGACGGAAGCGCCGAGCAGGTTGACGATGCTCCCGTGGTGGCTCCGGCAGATATCGGAGAGGCGATCTCTGAGCTCGTC
TTTGGCGATTCTCCGCCTGAACTTTCTCTGGAAGACGACCACCTCTTTCCCGCGCAAATTGCATCGCCACGAGGCTTTGGAGGAGGAGGAGGAT
AAGCGGTGGGCGAGGAAGTTGTTGGTGGCGGCGCGAATCTCGGAGACGTCGTAGATGTGGGGGTTCTCCGGTAAGGTTTCGCGGAGACTAGCGA
GGGATGCTCGACTTGCGGCTGAGGAGGAGGAGGAGGAAGCAGCTGTTTTGTTAGAGTTAGAGTTTGAGGTCGAGCTAGTTCCTGTTGTGCTTGT
TGTTGACGGAGATCTTCTTGACGAGTGGTGGTGACTTCCCTGAGATTGGCTTGGGCGTGATCGTGATCGTGATCGGGTTGGCTCCGAAGCATTG
ACGCCCATTTTGGATTTGCACATAGAGACGATGTCTTGTTTAAACGTGTGAAGGAGACGTACAAAATCATACATTAGATTTAGACGGCGAAGCG
ATCGCCAAGACAGAGATAGGCGCAATATAGTAGGTATGGACACGGAGACATGCGCAGTATAGTAAGTGTGGAAACGGCGACAGGAAGAAGGAAA
GTCTTCTCGCTTTCTGTCTTTTTCCCCCTTTTTTTTTGCATCTATGTGGTTAGCAATTTATAGAGAGGTTTTTGTAGCTTTTGTTTTTGTGCAC
AGGTTTTTGCTAAGCTTAATTCGTATAAAAATTCTAT |
Primers for UN00546 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
TCGTAGATGTGGGGGTTCTC |
59.927 |
20 |
TCTCCGTCAACAACAAGCAC |
59.88 |
20 |
152 |
1177 |
1328 |
| 2 |
TCGGAGACGTCGTAGATGTG |
59.855 |
20 |
TCTCCGTCAACAACAAGCAC |
59.88 |
20 |
161 |
1168 |
1328 |
| 3 |
TCGTAGATGTGGGGGTTCTC |
59.927 |
20 |
AGCCAATCTCAGGGAAGTCA |
59.803 |
20 |
191 |
1177 |
1367 |
|
|
