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Simple sequence repeat (SSR)
>UN80417
GGAATAAAAAAAAAGATTCTAGTTTCTCTCTCTTCAGAGAAAGAAGAAAAAAAAAAACGAAAATCTATTTCACAAATACAAAAAAAAGAAGAGA
GCTTTCTTGTAGAATTGAATCGATTGTGCCTGGTTAAAGCAATTGGGGGTTCTGTGGATCAGACAACGTAAACAAACCCTGTTTTCGTGTTGTG
TCCTCTTTGGTTTTCTCATTTTCTATTTTTTTTCTCGGAGAAAAACCTTTTCTGAGCTTTCCGGGAAAGTTTTGTCAGATTCGAAACAAAAAAA
AAAATCAAAGAAAATCCACAGAACAACCAAAACACAGATTCTTTCGATCACAATCCCTTTTGATCATATCTCTAATCAATCAACTAAATTCACA
ACTCCTTGAATATGAAACCACCACCACAAGCAGCTTCGTTAGATAGGTGGAGAGACTATTTCCGGCGAGGAGATTCCGATATTCGAGATCATCG
ATCACGCCATCATGGTTGCTGCTACGGATTGTCCGAACAAATTCAAATCGAGAAGAGACAAAATCGCAGAGCTTCTCTCCTCCTGTAGAGTCAC
TCGCTGCTGCACCGGTTGCCACCACCACCACCACCGCAAGCTATCGGTTCCCGGAGGAGAAGACGAGGGGGTTGATGTTGGTGCTGGTAGTAAA
GAGAGCAAAGCTAACAGTAGCAGAGGAGATAACAATCACACCAATCAGATTGTTAGCAATAATTATAATAATTATGATGATGAAGCTGAGCTTT
GAGCGATGCGATTGAGAGTTT |
Primers for UN80417 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
CACCACAAGCAGCTTCGTTA |
60.05 |
20 |
ATCAACCCCCTCGTCTTCTC |
60.456 |
20 |
243 |
398 |
640 |
| 2 |
GCAGAGCTTCTCTCCTCCTG |
59.43 |
20 |
AAACTCTCAATCGCATCGCT |
59.985 |
20 |
238 |
536 |
773 |
| 3 |
CACCACAAGCAGCTTCGTTA |
60.05 |
20 |
TACCAGCACCAACATCAACC |
59.42 |
20 |
256 |
398 |
653 |
|
|
