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Simple sequence repeat (SSR)
>UN08178
GGAGGGCGGTGACCAATGTAAAAATCAACTCCAATCCTTTCCGATTTCCGTCACCGTCGCCGGTCAGCTTCTTCTTCTTCTTCTTCCTCCCCCG
TCGAACGGTAATCATGGAGGAACATCATTGCTGCTTTTACTCCAAGATGCTCTCAAGATTCAGCATCGGGTCATTCATGCTTAGTTTAGTGATT
GTTCTAGTTGTCCGTGTGCTATATGTTTTGCACCGCTGTGGCAAACCCTTTCCCAAAGGAGCTTCACACTCGTTTACTACTCTGATTGTTCTTG
GTTCTGGGGGACACACGGCAGAGATGTTGAGCCTCCTCTCTGTTTTGCGCATGGACAGATTCACACCAAGGTTTTACATTGCTGCAGCTACTGA
TAACATGAGTCTCCACAAAGCTCGTTCCTTTGAAGATTCTCTACTACCTCACAAGCCTGCTGTTAAGGAAGACGTCTCCTTAAAGTTCACGCAA
ATTTACCGGAGTCGAGAAGTTGGTCAGTCTTATGTTACTTCTGTTTGGACTACCATTCTTGCCACTCTTCACGCTCTCTGCCTAATGATCCGGA
TCAGACCCCAAGTGATTCTTTGCAATGGTCCTGGAACATGTATTCCTCTCTGTGTGATTGCTTTCTTGTTCAAGGTGGTGGGAATCAGATGGTC
ATCGATCTTTTATGTTGAGAGTGTAGCAAGAGTTAAGAAGCTCTCGTTAAGTGGTTTGCTGCTTTACAAGTTAAGGATAGCTGATCAGTTCTTT
GTTCAATGGCCACAACTGCAAAACAAGTATCCTCGGGCTCACTATGTTGGTTGCCTGATGTAAGCTGAATTTTGGGAACTATCCTCATACATAG
ATTGCATTACAGTAACTTAGAAAAGCTACAAAGTTTACAGTGTTGAAATACATTTTTCGTAATAATACTCATGTTTGGTTGCTCTAAACGCAAG
TATAATCAATGAAGTTTTGTAATCAGCTTGCTGACGTCTCTATCTTTTGCCCATTTGGTCTTTCTGCTTCTGGTGGGACAGAGTATTCTCCTTT
TTGGATTCCACCACTTCTCTTCAAGCTTTTGTCATCAAGATAGTGTTGGTAGACATAGGACATGAAACCCCAAATAGCCAAGATCATAGAAATC
ACCTTTAAACCGTTCATTTTGTCATGGAAAATGATGACAGCTATGATGGGAACCACAGGCAGCCCAAGTACGCTTATTGCATTCGAGAACAGAG
AGGAAAGCTCAAAGATCAGTCCCGTGCCACCGATGTTGAACACCTGCCAGGTTATAGCTGTCCACACTAGGTTCATAACGTAAGATACTTTCCC
AAGCTTGTAGTTTTCCATCTCATTGCTCAGAGTTTTCCACTCGCTGCTGGCGAAAAGCCCCACCAAGCTAACGCAACTGGCCACTAGACTCATG
CAGATGATCATATCCATAACTTCTGTGAAAGTCTGCCTCTTCAGGACTTTGCGGAAGGCTAGCTGTTGTAAGGATAAGACTAGACCGAACCCAG
CAGAAGCACCGATGGTGCATAAGAAGCTTGTGACATACTGTGCTTTTGTAACTTTTTGAGAGTTTGAATCCTCGTTATTGAAGGCAAGGAGGGT
GGAAGATATGGTTAGTAGCAAAAGAGAATTCAAAATGATGGGAGTGAGCTTCTGTGAGTTGAGGAAATAAGAGAAGAAAGCGTTGAAGGCTAAT
TGAGAAGCACAGATCAGTGAATAGGTTGAAACAGGAAGGTAAAGCAGTCCAATGGAGTATAGGTAGCAATCTGCTCCTACAAGAACTCCAAGAA
CTACGTAAACCAGTACACGGTTCTTAAGTGAGGCTGCTTTGCCATCTATATGAGTTGTTGTTGTATGTGTTTTGATTGACAAGAGGTAATATGG
AAGCAGAACAGGAAAGCCTACAAGTTGAACAACCGTTGCTAGCCACTTGCTGTTTCCTCCGTTGTCATAGTATATTCTTCCCAGAATTGTAGCA
ACTGATTGGCCTGAAATGACAAAGAATGTATAGACCGCCACCCGGAGCCACCGTTTGTATGCGTTTGA |
Primers for UN08178 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
AATCCTTTCCGATTTCCGTC |
60.265 |
20 |
GAGTGTGAAGCTCCTTTGGG |
59.844 |
20 |
227 |
33 |
259 |
| 2 |
AATCCTTTCCGATTTCCGTC |
60.265 |
20 |
AGTGTGAAGCTCCTTTGGGA |
59.844 |
20 |
226 |
33 |
258 |
| 3 |
AATCCTTTCCGATTTCCGTC |
60.265 |
20 |
GTGTGAAGCTCCTTTGGGAA |
60.232 |
20 |
225 |
33 |
257 |
|
|
