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Simple sequence repeat (SSR)
>UN10002
GCACAGAGGTTCCAAACAGTTTTTATATATGTTTTTTTGGGGGTTTAAAACAAACACTTTCGAGGGTGATACGCTATAAAAGAAAAAAAAAGTT
TTTAAAACATTAATAAATTGTCATAGAAATACAAAAACAAAAACTCAAGGAAGAGAATCATTAAATAGAAATTATAATAATACTCTACATACTT
CATCACCCCCTTTTATTTCAGGAATTTAAAAGAGACACTCTCTATGGGAAAGAGACTCATAAGACAACGATAAAGCTCCAGGTGTGCCTTGTAC
CATTCCCCCCAACAGCAAAACCCAAACACACAGCTTTATTTACAAACTAGGCAACCCATCACTCACTTCAGAAGACACCACCATCCAGCATGGA
GTTGATATCATCTAAGCTCCACAGGTCCATTGGGTTTGCCTCTTCCTGAGTCATAGTAGCAGCATCTGCGCCAAGCATAGCTTCCACTTCCAAC
GGAGACTCCCACAAGGCGTTGTTCAGGTATGCCATCAGATCATCAGAACCATCATTGTTGCTTATCCCGTCCCCAGAGTTGGTTTTGAGCTTCT
TGGCTGCGTTGGTTTCTTCAATGAAAGGAGCTTGGTTGTTATTGACTAGCATTGAAGAGATCTCAGGTGTCTTGGGGCCGTGTTCACTCCACCC
AAACTCAGAGCAGTCCAAGGAGTTACTTCCCTGATCAGAACTGAAATACTGGTATCCATTGTTACCTCCAACATCAAAGAACTGATTGTTGAAC
ATCTGAGGCTTCGCTTCTGTGAAACTCACGTCACTAAAGGAGTTGTTGCAGTACTGACTCACATGTGTTGGCTGCTGAACCAAAGTTGTAGCCA
CTGGCTTCTTAAGATTGCTGGTCTTGGCAGCAGGGCGTTTGCTAGGGACCATCTCCTCAGGGAAATTCACCTTAGCTTTATTACCACGGATCCT
GCGTGCAGCTGCATCATAAGCTCTAGCTGCTTCCTCGGCAGTGTCGAATGTTCCAAGCCACTCTCTAGCGCCTTTTCTAGGATCACGGATCTCA
GCGGCCCATTTGCCCCAAGGGCGCTGCCTTATCCCTCTGTACTGATTCTTCCTCTTTCTCTTAGCAGATTTCTCAGCCTGCCCACCAGACTCTA
TCCCAGAAACTGGACCAGTGGTGGGAGGGGAAGCTGCTGGCTTGGTACCTGCGGTGAAAACAAAGGGCTTGACATCGGCGAAGACATCATCATC
ATCAACGTCGAAATCATCTTCGCAGTCGAAAGATGAATCATCCTTAAACCCTTGAAAGTCAGCCTCGAACTCATCCTCCAGATCGAGGAAATCG
GATCGCTTCTTCTTCGAAGCTTTCCCTTTCTTTTTCAGATCCGGCCAGATGAACTCGCTCGTGACGCGCCGGGACCTCGGCGGAGGGATGAAAT
CGGAGATTATAGCTCCTCCACACATGGCGGTGTTGAAATGCTTAGATATGTAAACTTAGCGGCGAAACTGTAAATAATTAGCTTCTTTGAGGTT
CTCTTTCGAAATATTTTTTCTCTCTCTCTCTCTTTGTGGTTTGTTGATGCTGTCCAGCC |
Primers for UN10002 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
ATAGCTCCTCCACACATGGC |
60.104 |
20 |
GCTGGACAGCATCAACAAAC |
59.297 |
20 |
144 |
1419 |
1562 |
| 2 |
AGGAAATCGGATCGCTTCTT |
60.173 |
20 |
GCTGGACAGCATCAACAAAC |
59.297 |
20 |
255 |
1308 |
1562 |
| 3 |
GGAGGGATGAAATCGGAGAT |
60.236 |
20 |
GCTGGACAGCATCAACAAAC |
59.297 |
20 |
165 |
1398 |
1562 |
|
|
