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Simple sequence repeat (SSR)
>UN01001
CCAACCAAAATAACACGCCAAGTGATCAAAAGATGACAGATACAAATCTAAACACGCTCTTCTATTTCCCATAGAATCATATATCATATTACAC
AAATCGCTTAGTCGACAACAACATTTAACTAAGGTGATCAATCTATAGACCTTGTCAAGTGGGTTTTGGGTCTGGGGCCAGGACCAAGACTACT
CCTTTCCTTAAGATTATGGCACTGCTTCAAAGATCTTTGGCCATACGAAAGAATCACATTTCTACAAACTTGAGATAAAGATGAAAAGAAAGAA
AAAAAACTATATATATATAGTGAGCTCTCAAGCTTCTTTTAAGATAATTTACAGGTAATTAAGGGAAACCGAATGACTTCACAAGTCACCCAAA
AGGCTCTTGCTTCATATGGAAACCGCCATTTTGCATTGTGTTGAAAGGCAGCGCCAAAGTTGAATAACTCAATAAGGTAGCTGAAAGATCATCA
TCTATTGCAACCGGCAATGGTGGCATCTGGCTCATCAAGCCAGGCATATTATTCATGTCGTTTTGGATGGAGATAAGGTTGTTCCTTGCCTGAT
AGAAGAGATCTATGTTATCATGTGCCTTGTATGAGGAGAGATTAGCTCTAATTTGACTAAATGCTCTTACATTCTGGTCTAAGAGACTGATCGC
ATTGCCGCTTAAATCTGAGGTTGTAGAGGGCATTAAGAAAGGGTAGGAAGCCATGCTAGAAGGCGAAACAGAAGGTATGCTCGAAGTCAATTCC
ACCTGCTTGCCCTTGCTATAACTTATCCTTTTTCCACAGTTTATTTCTTCTGCTTTCCTTCTCTTTCTCGTCATCCATCTACACCTTAAAGCAA
CATCTCGAACAGTTTTGTCAGGTAAAGTGGCTGCAATTTTGATATACTTCATGATACTTGGCTTATCCTTATAATTCTCAAGGCCAACCACATA
CTCCGACAAAAACAAACCCCAAAAACTACCTCTAAACCCTCACCATCCCTCCCCTTACAAATCAACTAAAAAGGAACAAACTTTAGCACTTTAA
GAATCGAAATCAAACTTTCCCTTGGATTCTCGGAGATCCAACTCCAAACTCGAAGCCCTTTTGATTAGATATGAAAAAGACAGACCTTGAGAAA
GTGAATCATGTTAAGCCCC |
Primers for UN01001 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
TTGTCAAGTGGGTTTTGGGT |
60.246 |
20 |
AGCCTTTTGGGTGACTTGTG |
60.149 |
20 |
236 |
146 |
381 |
| 2 |
CTTGTCAAGTGGGTTTTGGG |
60.38 |
20 |
AGCCTTTTGGGTGACTTGTG |
60.149 |
20 |
237 |
145 |
381 |
| 3 |
CCTTGTCAAGTGGGTTTTGG |
60.38 |
20 |
AGCCTTTTGGGTGACTTGTG |
60.149 |
20 |
238 |
144 |
381 |
|
|
