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Simple sequence repeat (SSR)
>UN10358
CAGATTTGAATAAAATTAAAAAAGAACAATAAAAAAAAAGAACAATAAAAGTTGTAAACTATTACTAGAGAAAGCAAGAAAAGCTATAGCAGAG
TTCGTTGAAACCACTAGAGAATTTAAGTATTACAACACTTGATACCAAAAGATTTGATCCTCTTTTGTCTTTTTGGAGCAGTTCAACTCAAGTC
GACATGTCTTGGAATTGCCACGGGTTGAATGTGATCGACTTGGGGTCGGTGCCATCTTCAGATTTATCAGCAGCTTCCCGGTGTTCCAAGTACT
TTCCATTGAACTGGTAAACTTCGAGATCTCCCCATGGTGTAGGAGTGACTTCCTCTGTTATATCAAACCACTTTGGAGTAAAGCTTTGGCCTTT
CTCTTCACGGGTTCTCTTTTCAGCTCTCTGTCTCTCTTCCATGCTGCTCTTCTCATAGCCGGATTTGGACATGTCACCCATCTCTAGTGCGTAT
CTATCAGGGCGTAGCCTTGAATCAGACGGCAAGAGCTTCTTTGGAGCAGTGTCGAAGCTATTGATCTTGTGAGCAAAGTGTGTGTACTGGTACT
TGTCATCCTTTGGAGCATCAGCGAGTTTCCAGACCTCCTTTAGTTCAGTGCCTGGGAGAGGTTCACCTTCACCATCACACTGCTGATAGCTCAT
GGACTCGTTCCATTTACCGGTCATGAGTATCTTTGGCTCCTCAGAGGCGTTATAGACATATCCATCCACTTCATACCGACCAGATCCGAACCAG
CCACATGGTTGGAAGTAAAGCACGACTTTGTCACCAGTGGTGAGGTTGGTCATGATCATTTCCCCAGGAGAATCAACCCAAGTTCGCCCAAAGA
TTAGGTTGTGAACTTTGGTCAGAGGAGGTACCAAGTCAAGAACCACTCCATCTCTTTTAAGTGTCACCCTTGTCCTTCCTACTGGGTAAACGTC
AATGGAATTGCCGAGAAACTTGGTTTTCAGTTTTGAAGTACAATCATAAGTGAAATGCTCATTTTCAGCATGACCTGCGCTCATTGGCGGGTGA
TGGCTGACCTGTTCGGATATGAAGTTAACACCATTGTAATTAGCCATCTCATAAGTCTCTCCGAGGATCGGATTGAACGGTTTCCACGTACGTT
GGAAAGCATAGTACACAGATATAGCCCATGATGAGGCATACACCATGCGCATATAAGGATCCTCGGTTTCGTCTGCCATGTCTAGTAGATGCGA
GTACTCCATCAACTCAGCCATTTTCTGGAGCATTGTCATTGGTTCGAAAATGATAACAGGAAGTGTCACCATTGATGTAACATCAGACCCAATG
TACTTCTGCATCATCTTCCAATAACCATCTCTTTCCTCTTGCTTCCATCTTCCTCTGTTTGCTTCCTCAGCTGCATCCTCTGTACTTCCTTCAG
GGTTAATAACTTCAAGTCCCTCATAGCCAACCAACCCGTTAACTGATTTGGTCATGGCCGATCCCAAGCTTGAGATCGAGGAAGCAAGAGACGC
GAAGAAACCACCGCCGTTTTTGGGATCGTTAGGAGCCATCTCTCCCCGCCGTGGACTACGAGCGCCGGCTATAAAGAAATCGAGAGAGAGAGAG
AGAGGCGTTGGTGGAAATTTAAAGGAGAGAGATTCGTCTATAATGGAAGAACAGCGATGAAGACGAAGATGCAGAT |
Primers for UN10358 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
GTTAGGAGCCATCTCTCCCC |
60.037 |
20 |
CTGCATCTTCGTCTTCATCG |
59.547 |
20 |
141 |
1532 |
1672 |
| 2 |
GTTAGGAGCCATCTCTCCCC |
60.037 |
20 |
TCTTCATCGCTGTTCTTCCA |
59.522 |
20 |
130 |
1532 |
1661 |
| 3 |
CGTTTTTGGGATCGTTAGGA |
59.931 |
20 |
CTGCATCTTCGTCTTCATCG |
59.547 |
20 |
154 |
1519 |
1672 |
|
|
