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Simple sequence repeat (SSR)
>UN10960
GGGCGAGAGGAAACGCGTCAGCATTGCGTTAGAGATCTTAACGCGGCCACAGATTCTCTTCCTTGACGAACCCACAAGCGGTTTGGACAGTGCT
TCTGCTTTCTTTGTGATTCAAGCTCTTAGGAACATAGCTAGAGATGGCGGAAGAACCGTTGTTTCATCGATTCATCAGCCTAGTAGCGAAGTTT
TCGCTCTCTTCGACGATCTTTTCTTGCTCTCTAGTGGTGAGACTGTTTACTTTGGTGAATCCAAGTTTGCTGTTGAGTTCTTTGCTGAAGCAGG
GTTTCCTTGCCCGAAGAGGCGGAATCCTTCGGATCATTTCCTGAGATGTATAAACTCAGATTTTGATGCCGTTACAGCTACACTTAAAGGATCT
CAGAGGATGCGGGAGACACCAGCTACATCAGATCCTTTGATGAATCTAGCAACATCTGAGATCAAAGCTAGACTTGTTGAGAATTACCGTCGCT
CAGTCTACGCTAAATCTGCTAAGTCTCGGATCCGTGAATTAGCTAGCATTGAAGGACATCATGAGATGGAAGTAAGGAAGGGAAGCGAAGCGAG
TTGGTTTAAACAGCTAAGGACGTTAACAAAGAGATCGTTTGTGAACATGTGCCGCGATATTGGGTACTACTGGTCAAGAATTGTGATCTACATT
GTCGTATCCATCTGTGTTGGAACCATCTTTTACGATGTAGGGCACAGCTACACATCGATCTTGGCTCGGGTTTCTTGTGGTGGATTCATTACTG
GTTTCATGACTTACATGTCCATTGGAGGGTTTCCTTCTTTCATTGAAGAGATGAAAGTGTTCTACAAAGAGAGACTGAGTGGTTACTACGGCGT
TTCGGTTTATATTATATCGAACTACGTCTCTTCTTTCCCGTTCTTGGTCGCCATTTCGGGCATCACGGGGAGTATTACTTACACATGGTGAAGT
TCCGTCCAGGGTTCTCTCACTGGGCTTTCTTCTGTCTCACATATTCTTCTCTGTCTCGGTCATTGAGAGTCTCATGATGGTTGTTGCTTCTGTC
GTTCCAAACTTTTTGATGGGTCTCATTACCGGAGCTGGTATCATTGGAATCATCATGATGACTTCTGGATTCTTCCGTCTACTTCCAGATCTTC
CAAAGATTTTCTGGCGATACCCAATTTCTTTCATGAGTTATGGTTCTTGGGCTATTCAGGGTGCATACAAGAACGATTTTCTTGGACTAGAGTT
TGAGCCTATGTTTGCGGGAGAACCCAAGATGACTGGAGAGGAAGTTATACAGAAAATATTTGGAGTTAAAGTCACACATTCCAAGTGGTGGGAC
TTAGCAGCGATTGTGTTAATCCTTGTGTGTTACCGCATTCTCTTCTTCATAGTGTTGAAGCTTAAGGAAAGAGCAGAGCCGGCTTTGAAGGCGT
TACAAGCAAAGAGAACGATGAGGAGTCTCAACAAGAGACCTTCTTTTAGGAAAGTCCCATCTCTATCTTCCTTATCTCCAAGGAGACACCAAGC
TCTACATTCACTTTCTTCTCAAGAAGGTCTTACTTCTCCAATCCATTAAAGACTACATATATATATATCTATATATTTGTATACACTTTGTGGC
TTCCATTTGCTTTGCACATACAATAGTTTCAACATTATCAATATGTATCAGCACCTGATGATTCTATTATCCA |
Primers for UN10960 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
TTAAGGAAAGAGCAGAGCCG |
59.724 |
20 |
GCAAATGGAAGCCACAAAGT |
60.118 |
20 |
231 |
1378 |
1608 |
| 2 |
TCCAAGGAGACACCAAGCTC |
60.386 |
20 |
GCAAATGGAAGCCACAAAGT |
60.118 |
20 |
122 |
1487 |
1608 |
| 3 |
TCTCCAAGGAGACACCAAGC |
60.386 |
20 |
GCAAATGGAAGCCACAAAGT |
60.118 |
20 |
124 |
1485 |
1608 |
|
|
