 |
Simple sequence repeat (SSR)
>UN13068
CTTTCTTGTCTTGTTCTGATATTTTTCCTCCATTATTCCTCCTCTTCTTCATCTCTCTCTTTTTTTTGGTTGGTGGTAGAGATTAATCTCTCTC
TCGCTTCCTGCTCTCTGTATCGTGATCATCGTCGCTGTTTGGTAACTGCACTTTTTAGAGAGGTAGAGAGATCAAAGAAGATAAATGGATATTC
CACAAGACGTAGCTGGAGCTTGGGGGATTCCCTCTGGAATGGGACGCCACCACCGTCATCTCCCCAATGATGCTTCTCTCTTCTCCGCTTCTTT
ACCTGTTCTTCCCCATGGAAAACTACAATCAAGTGACAGCAGAGACGGTTTCCCATTCCTAGACGACGCGGCTGCTTCTCGTGGTCCCATCCAC
GACCACGACATTGAGTCTCATTCCATTATGCTCCCTGACGAAGACGATCTTCTCACTGGGATGATGGACGATCTTGACCTCACCGAGCTACCAC
CAGACGCTGATGAGTACGATCTCTTCGGCAGCGGAGGAGGCATGGAGCTCGACGCTGACTTCCGTGACGGCTTGACCATGAGTGGTGGTGGTGG
TGGTGGTGGTCCTCCAAGGCTAAGTCTCGGTGGTGGGAATAATGCACCAGTTCCGCAGTTCAATGTTCAGAACGGCGCTGCTGGAACTGGAACA
ACGGTTGCTGGCGAGCATCCTTACGGTGAACATCCCTCGAGAACGTTGTTTGTCCGTAACATTAACAGCAACGTAGAAGACTCTGAGCTCAAGA
CTCTCTTTGAGCAATACGGTGACATTAGAACGCTCTATACTACTTGTAAGCATAGGGGATTTGTGATGATATCTTATTACGACATCCGTGCTGC
TCGAATGGCTATGCGGTCTTTGCAGAACAAACCATTAAGACGGAGGAAGTTGGATATCCACTTCTCAATCCCTAAGGATAATCCATCTGAGAAG
GATATGAATCAGGGGACACTAGTGGTTTTTAACCTGGACCCTTCCATAACTAACGATGACTTGCATGGAATATTTGGTGCTCACGGCGAGATCA
AAGAGATAAGGGAGACACCGCATAAGAGGCACCACAAGTTCGTAGAGTTTTATGATGTACGGGCTGCTGAAGCAGCTTTAAAGGCTTTAAATAG
GTGTGAGATTGCTGGAAAGCGTATTAAAGTTGAACCTAGTCGCCCTGGAGGAGCTCGTCGAAGCTTGATGCTGCAACTTAACCAAGAGCTTGAG
AACGATGATTTGCATTACCTACCTCTGCTTGGTTCACCCATGGCAAACTCTCCTCCAAGTAACTGGCTGCAAATGAACAGTCCCGTTGAGGGAA
GTCCGCTTCAGAGTGTGCTGAGCAGGTCACCAGTTTTCGGAGTAAGTCCTACAAGGAACAGCCACTTGTCTGGTTTGGCTTCTGCTCTGAACAC
ACAAGGACCGAGCTCCAAGCTTGCACCCATCGGTAGGAGTCCAGTCAATAGCAACGTCTTCCAACAGACGTCTCATCTGTTCCAAGAGCCAAAG
CCGGATAACAACAAGTACAATGGAAACCTCTCTCCCTCTGGTCCTTTGATCTCGAACGGAGGCGGCATCGAGACGTTATCCGGGTCAGAGTTCC
TCTGGGGCAGTCCCAACACACGCTCTGAGCCTTCAAACTCTTCGGTTTGGTCAACATCATCCACCGGGGTTCCCTTCTCCTCGGCTCGTGTAGA
CCGGTCTGTTCCGTTTCTGCACCAAACACAAAACCGCATCCATCATCATCATCATCATCTCCACGTTGGGTCTGCACCATCTAATGTTCCTCTA
GAGAAACATTTTGGATTCTTCCCGGAGTCTTCAAAGGACACTATGTTCATGAACACAGTTGGTGGTCTCAACGGTGGGAGTTTCCCGTCAAGAA
TGGCTAATCATGGGATTATGAACCCTGAGAACGGTTTCTCGAGTTACAGAATGATGTCTTCGCCGAGGTTCAGCCCTATGTTCTTAAGCAGCGG
TCTAAACCCTGGACGGTTCACCTCTTCTGGTGTTGATGGATTGTATGAGAATGGAAGGTCCCGTCGAGTGGAGAACAGTTCGAGCCAGGTTGAA
AGTAGGAAGCAGTTCCAGCTTGATTTGGAGAAGATTATGAATGGAGAAGATTCTAGGACTACCTTGATGATTAAGAACATTCCTAACAAATACA
CTTCAAAGATGTTGTTAGCGGCGATTGATGAAAAGAACCAAGGCACTTACAACTTTCTCTACTTGCCCATTGATTTTAAGAACAAATGCAATGT
TGGCTATGCATTCATCAACATGCTCTCTCCTGATCTCATTATTCCATTTTACGAGGCGTTTAACGGGAAGAAGTGGGAGAAGTTCAACAGTGAG
AAAGTGGCTTCGTTGGCATACGCTAGGATACAAGGCAAAACTGCACTTATAGCCCATTTTCAGAACTCGAGCTTGATGAATGAAGACATGCGTT
GCCGTCCAATCATTTTCGACACACCTAACAGTTCAGACTCTGTTGAACAGGTTATTGTTAAGGAAACTAAGAACGGGGATTTATTTGACTCTGA
GGTTAATGATGATGGCGATGGTAGAGAGAAGAGCTGACCCAAGAGAGAGAGAGAGAAGACTCGGTGTTGTGATCATGGCTTTGTTTTTTTCTTT
TTCAAGTACTAATTATTAACCGTACATAATGGGTGAAAGGCAGAGTTATAACTGATGCAGGAGCCTTGCAAAAGTGTGTTTTGCGATTTGCAGG
TTTTAAATGCTGCAGCTGGAGAGTATCTATCTTATCTTACTCTACTCTGTTTCTTCTTTTCTCTTCATGTTTTTTTTTTTTGGTTTGGTTCCAT
GGAGCACTGTATATTATAAAGAAAAGCCATGAATACTCGGATTTTATGTGGGTAATGATGTTGTAACTCTCTCTGTGACTCTTGTTGCTTTTAT
TTATTAAAAGGC |
Primers for UN13068 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
CCAGACGCTGATGAGTACGA |
60.008 |
20 |
AACCGTTGTTCCAGTTCCAG |
60.005 |
20 |
195 |
470 |
664 |
| 2 |
CCAGACGCTGATGAGTACGA |
60.008 |
20 |
TTCCCACCACCGAGACTTAG |
60.103 |
20 |
134 |
470 |
603 |
| 3 |
CCAGACGCTGATGAGTACGA |
60.008 |
20 |
AACAACGTTCTCGAGGGATG |
60.111 |
20 |
239 |
470 |
708 |
|
|
