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Simple sequence repeat (SSR)
>UN01380
TGATCTATCTCTCTCTCTCTCTTTTTTTTTTGAACAACTGATCTATCTCTCTCTATATTCCTTGAGTTTGTGAGGAAACATGGATTCGGACGCG
ACCGTGCCACTGAGCGAGCGACCGGAGTGGTCGGACGTCGTGCCGTTGAGTCAGGACGATGGTCCGAACCCGGTGGTTCCGATCGCGTACAAGG
AAGACTTCCGGGAGACTATGGATTACTTCCGCGCGATTTACCGCTCCGACGAGCGGTCTCCTCGCGCGCTGCGACTAACGGAAGAAGCTCTCCG
CCTAAACTCCGGCAACTACACCGTAAACTGAGATCCTTCTTCTTCTTCTTCTTATTTGACTTACTGTTCTGAAAGAGTTGTGGATTTGATTAGA
GCATATATATATCTGTTCTTTTCTTTTCTTTTTTTTGAAGGTGTGGTACTTCAGGCGCTTAGTACTGGAGGAGCTTGATCACGACTTGTATGAA
GAGCTCAAGTTCATCGAAACCATTGCTGAGGATAACTCTAAGAACTACCAGTTGTGGCATCATCGGAGATGGGTTGCAGAGAAACTGGGTCCTG
ATGTTGCAGGAATGGAACTTGACTTTACTCGGAAGGTTCTATCAGTTGATGCCAAACATTATCATGCTTGGTCACATAGGCAGTGGGCGCTACA
AGCATTAGGAGGGTGGGAAAATGAGCTTGATTACTGTCACGACCTCCTTGAAGCTGACGTCTTTAACAATTCTGCGTGGAATCAGAGGCATTAC
GTTATTACTAGATCACCTTCGTTGGGAGGCCTAAAAGCCATGAGAGAATCTGAAGTAAGCTACACAGTCAAAGCCATTTTAGCAAATCCCGGGG
ACGAGAGCTCTTGGAGATACCTGAAAGCTCTTTACAAAGACGACACAGAGTCCTGGATTAGTGATCCAAGTGTTTCCTCAGTATGTTTGAAAGT
TCTCTCGCGCACGGACTGCTTCCACGGATTCGCTCTGAGCACCCTTTTGGATCTTCTATGCGATGGGTTGAGACCAACCAACGAGCATAGAGAC
TCGGTGAAAGCTCTAGCTAATGAAGAATCAGAGACTAACTTGGCCAGTTTGGTGTGTACCATTCTAGGTCGTGTTGATCATATGAGAGCTAACT
ATTGGGCATGGAGGAAGAGCAAGATTACAGTGGCAATATAAACCTACCCTGAATCACACTTGAAAAAAAGTTGTTTATTTTTACGTTTTAATCT
GCTGCTTTTTCATGAAATCGCATGAACATGTTACCATTCGTCAAAACAAATCTTTTTTTCCCG |
Primers for UN01380 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
AAGCTCTCCGCCTAAACTCC |
59.983 |
20 |
CCTCCAGTACTAAGCGCCTG |
60.03 |
20 |
175 |
273 |
447 |
| 2 |
GCTGCGACTAACGGAAGAAG |
60.154 |
20 |
CCTCCAGTACTAAGCGCCTG |
60.03 |
20 |
192 |
256 |
447 |
| 3 |
CTGCGACTAACGGAAGAAGC |
60.154 |
20 |
CCTCCAGTACTAAGCGCCTG |
60.03 |
20 |
191 |
257 |
447 |
|
|
