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Simple sequence repeat (SSR)
>UN01556
TAAGCGAAAAAAAAAAAATGCATGAATCAAAGCGTATAGTTTAATTAAACTGCTACATCATCATCAGACAAACCAGGAATGTTCAAAGCAGGAT
GTTAACTAAAAACACAACGTTTGCTTTTTTTCGGCACAAGAGATCGAAACACCCATCTTCTTCTGATGAAACTACTTCAGTAAGCTACCTGCAA
CCATGCTAGGTTTTGTCAAAGTTTTACTGATGAGATCTCTCAGCTCGATCTCTCCCGGGAATCTACCCTCTTTCAACTTAGAGAACACCAGTTC
CCCGTTGCAGAGAACTTCAAAGGCGCCTGAGCTTTGAAGGTAAGACTGGAGAAAGTTACCGATAAGCCAAGTGGAAGCCATGGATCCAAACCTA
TTGGCCCTCAAGGAGTTGAACCATGCGGGTGGATGCGCAATACCAATCATGGGAAAGACACGATCACCCGCAACTATCATCCCAATAACTCCCA
TCTGAGCAACGGGGACAACCTTAGCTAGAAGACGCTTTGGTGGTGGTGGTGGGTAGTTCGCAAGAACCACATCTAAACCGGGAAAAGCCGTCTC
TAACATCTTCTTCATATTCACTGCAGTTCCCTTGAAAGAACAGGAGACGCAGAAGTTGATCTCCACAGTGTTTCCATATCCAACTGCTCCTCCT
AAGCCACTTGCCTGTGAAGGAAAATCAGGAACGACAACAGGCGGAGGCTGCTGGTGAGGGATGTGCGGTGGATGATTGGGACGGTGACTCGGAG
GTTTGGGAGGCGGAGGAGTGAAAAGGTTGAAGAGATCCGAACAGAACAAGAAAATCGGTAAACCTATCAACAGCAATTGTGATCTGCCCATGGC
GAATTATTATCAATCTCCGACGGAATGACAGAGTCGGTAAGTCCACCCTCCGATCGAAGAAAGACCGAGAGAAATTTATTTAACCCTTGTTTCC
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Primers for UN01556 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
TCATGGGAAAGACACGATCA |
60.048 |
20 |
TGTGGAGATCAACTTCTGCG |
59.984 |
20 |
209 |
423 |
631 |
| 2 |
TCATGGGAAAGACACGATCA |
60.048 |
20 |
GCCTGTTGTCGTTCCTGATT |
60.119 |
20 |
278 |
423 |
700 |
| 3 |
ATCCAAACCTATTGGCCCTC |
60.152 |
20 |
TGTGGAGATCAACTTCTGCG |
59.984 |
20 |
266 |
366 |
631 |
|
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