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Simple sequence repeat (SSR)
>UN15559
CAATGAAGAGGCAACCTCTGTTTTATTACATTAACATTAAGATTACATAAAAGCCGATATTTTTTATTACATTAACATTAAGATTACATAAAAG
CCGAGAAACATGATTCTTTTTTAGACACCACAGAAAACATAGTGCTTCTATTACACACACACTGAAGCAGATATATTTTTTTCACAAAGAGTTA
CCATTTAGCAGCCTCTGCAAGCAAAGCAGAAAACTTAAACCTCTTGATATTGAGTTTAACTTCCTCAGCACATAACTCTTTCCACTCATCGCTC
AGCTCTTTTCTTTTACCAGATCCAAGGTTCATCAACTTCTCAAGCTGCAATTTCTTTTGATAATCACTTAAACCTTTAGACACTATGGTCTCGA
ACGCATCCCGCACAGCCCATGTCTCGTCATTGCCTTCAAAGTCAGCTTTTGGTAATGATTCATTACCCATTTCATCACCATTCTTGCTGCTGTG
ATTAACAGACTGATCAGGTTCATTTTGGGGGGCCCATATCCTTTTGGAAAGTAGGAAGGCTTCAGATTTGCTGGTGTTTCCTTTCCGCATGCTA
ACAATGAACTTACCTTTCAGCTTGCGGATCTTAGTCAAAACCTGATCCTTCGAGTATATCGCAGTGATGGAATCACCGAGGAAACGGTAAAAGT
CAGCCCAGTTACTGTTGGGCTCGTTCCCTGTCTTGGCTCGATAATCCACTAACCCTTTTAAGACAGTGAGCTCATCTTCCTCGTTCCAGATTCT
GCTGCTGCTGCTGCTCGCCAATGTCTTCTTCTTCTTCTTCTTCTTCTTTGTCACTTGTTCTGCTGCTGCTGCTGGTTGTGGAGGAGAAGGCTCT
GAAGCTTGTTTCCGTGGGGATTTTCTGAGAATATGTGAAGGCGGAGATGCTCCGTCAGAGAAATCAAGATTCACCATGGGCATGGTTGGTCGCA
ATTCTCGCATGCAGAGAAGCCCTGATATTTTCTTTTTTGTTCCAATTTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTAG
ACAGAGAGAGAGAAAAAAATGGCGAGATTCACGGTGTTGATTGCGGCAGTGGTACTGGCCATTGTAGTGGCGGTGCCTGAAGTAACTGCGAAGA
AGTACACAGTCGGCGAGAACAAGTTTTGGAACCCCAACATCAACTATACCATTTGGGCTCAGGGAAAGCATTTCTACCTCGGAGACTGGCTCTA
TTTCGTGTTCGACAGGAACCAACACAACATTCTTGAAGTAAACAAGACCGACTACGAAAACTGTAACGCCGACCATCCTCTCGTAAACTGGACG
CGTGGAGCTGGGAGAGACATTGTCACTCTCAACGTGACCAAACATTACTATCTTCTCGACGGAAGGGGTGGCTGTTACGGCGGCATGAAGCTCG
CTGTTAAAGTCGAGAAGCTTCCTCCTCCACCGAAAGCGGCACCTGTCAAGAGCATTGGTTCAGTTTCCATGGCCACTGGTGTTGCTCAGTTCGT
GATCCCGTTTGCTCTTTTCTCTGTTTCCCCGGTGTGGGACGCCATCTTAAGGATGTGGTAAATGACCAATGCTCGGTCCGAGTCGGACCTCTTT
AGTTGGAATCCATTTTCGAGTTTAAAGAAACATCAAATTCTTTTTCAGGGAAAGCATTTTTAAGTTAGAAAGTTCATCAGCTGAGTTTATGTTT
GTAATGTTGGATTGTTGGTTTTTAATCTTTTGTTTTGTATGTCTCTTTGAAATCAATTGTTGAAAAATGTTGTATTTTGATTTACTTGAGATTG
ATTACATTTAATTATTGGAACTTTCATTTAAGATTG |
Primers for UN15559 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
ATATGTGAAGGCGGAGATGC |
60.066 |
20 |
AACTTGTTCTCGCCGACTGT |
59.914 |
20 |
277 |
877 |
1153 |
| 2 |
AATCAAGATTCACCATGGGC |
59.756 |
20 |
AACTTGTTCTCGCCGACTGT |
59.914 |
20 |
246 |
908 |
1153 |
| 3 |
AATCAAGATTCACCATGGGC |
59.756 |
20 |
TGGGGTTCCAAAACTTGTTC |
59.807 |
20 |
257 |
908 |
1164 |
|
|
