 |
Simple sequence repeat (SSR)
>UN16161
CTGTCACCGTAGAAAGAAACAGCCAGTGGCTGTTCTGTTCTGTTTTTTTTTTGTGTTCCTCCAAAGAAACGCAATAAAACGTGCCAGAGAATAA
GAACGCACTTTCAATCAATCAACCAACCAACCGACGGATTCATCTTCCTCATATCTCTCTCTCTCTCTGTATATTCTTAGCATCTTCTCTAAAA
GCTGAAGCTTGAGAAGAGAGCTCAAGATTCTCTTGAGTTTCTGTAATTTAGATCTCATTGAGATAAGAGAGAGAGAGAGAGTATCCAATTGTGT
CTGCATCTTACGCGGTTTAGGCGGGAGGAGGTTTTGTGCTTGTGAATGCACTGTTGAGCTGATCTTACACAGGTCCATTAAGCTCAGTCTAGAA
TAGTGAGGACGATGAAGAACGGGATGGCTGAGTGCAGCGTGTGTCGTTCGAGGAGTATCAAAGCTATAGCGAGGGCTTATGATAACCGGAAGAT
TAGAGTTTCCTCTAAACAACGAGCTCTCAATGTCTTTTTGGTGGTCGGTGACTGCATGCTTGTTGGTCTCCAGCCTGTGTTAGTGTACATGTCT
AAAGTGGATGGAAAGTTCAACTTCAGTCCTATTAGCGTCAACTTTTTGACGGAAATCGCAAAGGTTATGTTTGCGCTTGTCATGCTTCTGATCC
AGGCCAGGCACCAAAAAGTTGGAGAGAAGCCTCTACTATCCCTTTCCACATTTGTCCAGGCAGCTCGGAACAATGTGCTTCTCGCTGTTCCAGC
AGGATTGTATGCCATTAATAACTATCTTAAGTTCACTATGCAGTTATATTTCAATCCTGCTACTGTGAAGATGCTCAGCAATCTAAAGGTTTTG
GTAATTGCTGTGCTACTGAAGATGATAATGAAGCGACGGTTTTCCATCATACAGTGGGAAGCACTTGCTCTGTTGCTGATAGGGATTAGTGTAA
ACCAGCTGCGTTCTCTTCCTGAAGGTGCTACTACTATGGCTGTTCCAGTTGCTATGGGTGCATACATCTGTACCTTTATCTTTGTTACTGTCCC
GTCCTTTGCATCTGTCTACAACGAGTATGCTCTGAAGAGCCAGTATGACACCAGCATTTATCTCCAGAACTTATTCCTCTATGGTTACGGTGCA
ATATTCAACTTCCTTGGAATACTAGCAACTGTTATATACAAAGGTCCTGGCAGTTTTGACATCCTACAAGGACATTCTAGAGCTACCATGTTTC
TGATACTGAACAACGCAGCACAAGGGATTCTATCCTCCTTTTTCTTCAAATATGCAGATACAATCTTGAAGAAGTATTCATCTACGGTTGCCAC
AATATTTACTGGCATAGCATCTGCAGCTCTCTTTGGACATGTGTTAACCATGAATTTTCTTCTGGGGATTTCTATAGTTTTCATTTCAATGCAT
CAGTTCTTTTCACCGCTTGCAAAAGTGAAAGACGAGCAACAAAACGGAAACATAGAAATAGTTAATGCAAAGGATGGTCATAGGGCTAAAGACT
CATTCATCAACATGGCAGCAGGAGCAAATGAAGAGGCTAGTCACCGTGTTGAATCAGACGACAGAGAGCCGCTTCTTCCAAGATAAACAAAACT
CTCTCAGTGAGATCATAAGCACCTAGTTCGGTTGTTAGATTTCTGTTCACACAGTCCTTGTCTCAGGGGCGGATCTATTAACAAGTTAGGGGGG
TCAGCTGACCCCACTAGATTTTTTTTATTTCTTTCTCTACATAAAAGTTCAGGGTCCGATTGGGGATAGGGCTGTTGAGGCTTTGTGGTTGTAT
AAAGCCATGAAATCCAAAAAATTACCAATCAATTTTATGGGGTTTTAGAAATTTGTAAAGCCTTAAAACCATTTAAAAACTGTCTTTTTGTTCA
TTTTTTTTTCAACAGCC |
Primers for UN16161 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
GTTCCTCCAAAGAAACGCAA |
60.227 |
20 |
AAACCGCGTAAGATGCAGAC |
60.278 |
20 |
246 |
55 |
300 |
| 2 |
TTCCTCCAAAGAAACGCAAT |
59.685 |
20 |
AAACCGCGTAAGATGCAGAC |
60.278 |
20 |
245 |
56 |
300 |
| 3 |
TGCCAGAGAATAAGAACGCA |
59.566 |
20 |
AAACCGCGTAAGATGCAGAC |
60.278 |
20 |
219 |
82 |
300 |
|
|
