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Simple sequence repeat (SSR)
>UN16873
GAGGTAAACTAAAAGGATGAGTAATCAGAGAAAGAGACCCAACGGAGGAGAAAGAGAAGAAGATGACGAGGAGGACGATGCGGAAGGTATCGGC
CAGTGGGAGAGAGCTTATGTCGACGACAGATCCTGGGAGGCGTTGCAAGAGGATGAGTCTGGACTCTTACGGCCGATTGATACCAGTGCCATTT
ACCATGCTCAGTATCGCCGCCGTCTCCGTATGCTCTCCGCCGCCGCGGCTGGTACTCGTATCCAGAAGGGGCTTATCCGCTATTTATACATCGT
CATTGACTTCTCTCGGGCAGCTGCGGAAACAGATTTCAGACCAAGCCGGATGGCCATAATGGCAAAACATGTTGAAGCTTTCATTAGAGAGTTT
TTTGACCAGAATCCTCTGAGTCAGATCGGTCTGGTCTCGATAAAAAATGGGATCGCGCATACACTAACAGATCTTGGGGGTAGTCCTGAGTCAC
ACATACAAGCGTTGATGGGAAAGCTGGAAGCTGCGGGTGACTCATCTTTGCAGAACGCCCTGGAACTTGTGCACGAGCATCTCAACCAGATCCC
ATCTTATGGTCATCGCGAGGTTCTGATATTGTATTCAGCTCTGAGCACCTCTGACCCGGGAGATATCATGGAGACTATTCAGAAATGCAAGAAA
TCAAGATTAAGATGTTCTGTTATTGGACTTTCTGCAGAGATGTTCATATGCAAACACTTGTGCCAAGAAACTGGTGGGTTGTATTCCGTTGCAG
TAGATGAGTGCATTTAAAGGATCTGCTGCTTGAGCATGCGCCTCCACCTCCGGCAATAGCAGAATTTGCAATTTCTAACCTGATCAAGATGGGT
TTCCCACAAAGAGCTGCTGAGGGTTCAATGGTGATATGTTCGTGTCATAAGGAAGTTAAGATCGGAGCTGGTTACACGTGCCCGAGATGTAAAG
CTCGTGTATGTGAGCTCCCTACGGAATGCACCATCTGTGGTCTGACGCTTGTTTCATCGCCGCATCTTGCGAGATCATACCATCATCTCTTCCC
AATTGCTCCATTTGATGAGGTTCCTATTCTGACAAGTTCGAATGATCCTCGGAGAAAACTGGGAAAGAGTTGTTTTGGTTGCCAACAGAGCCTA
CTTGGTGCAGGGAACAAACCGGGACCCTGCGTAACATGTCGGAAATGCAAGCACTATTTCTGTCTGGACTGCGACATATACATCCACGAGAGCT
TGCATAACTGTCCTGGCTGCGAGAGCATTCACCGTCCCAAATCTGTTTCCTTGATGGAAGAATGAGAGAATGTGTTCACACTCGCGCAATTTTT
TCAAACGATTATTATTATTATTTTTTTTAATTGAATGTTAAATTTAATTCAAAAAGAAAAAGACTTTGTTACAACGAAGTGTTTCCTTTTCCAA
ACTTTTTATACAAGAAAT |
Primers for UN16873 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
CATCCACGAGAGCTTGCATA |
59.972 |
20 |
TTTGGAAAAGGAAACACTTCG |
59.231 |
21 |
203 |
1209 |
1411 |
| 2 |
TTGCATAACTGTCCTGGCTG |
59.864 |
20 |
TTTGGAAAAGGAAACACTTCG |
59.231 |
21 |
190 |
1222 |
1411 |
| 3 |
CATCCACGAGAGCTTGCATA |
59.972 |
20 |
GTTTGGAAAAGGAAACACTTCG |
60.015 |
22 |
204 |
1209 |
1412 |
|
|
