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Simple sequence repeat (SSR)
>UN16989
CAGTGGAACTATTTATTTAATATTTTATTTATAACGACAACTGTTTATTTAATTATTGTTAGAACATTGTACGACGTTTAAGATGGAAACAGAC
GATATGAAAAAGAAGAATGTGGTACAGAGAATTCCTTATATATATATAAAGAGGAATCAAATGAGATGGCAAAGACGAGGCCTTGAACACAAGT
GCCTACCATTGACCTTGATCATCGCCACCACTCCTGCAGTCACTCCTGCCCACAAAGCCGACGCCAGATACTGCTGCGTGTTTCTTCCCGCTTG
ATGAAAAGTGAAAGATGTCACTGTGACACCACCTATCAACAACGCTGATGCTACTGGCAGAAAAGAGGGTTGTGATCCTCCAATAGGCTGGAGT
TGTGAAGGGCTGTTTGTGCCCACCGTGTAGCGACCACTTATGAGATCCAAAGCATCCTGCCTCACACCATCCTGGAAATTATTCAGATAATATC
TAGACATAGCACTGATGCCATCTTTGATTGCTCCAGATACAGTTTGTTTCCCGTACCTGACGAGGTCGCCCTTAAGAGCATATGTCCCGGCGTA
TTGCAAGCTAATCTCGTCCCCTTGCTCAGCCCAAATTGTTCTGAACTTTGTGTAATCATCTCCAAACATGGATACACACTCTTTGGAATCAAGC
ACTCCGATCCTTTGAAGTTGTAAATTCAGAGACTTCTGGGCCATGTAATTCTGGGTAACATTTGTGCGGTCAAGACAGTCGATGCAGTTAGATC
TGACAACTCCTTTCTGCTCTTCTAGGATGTTACCGTCTGCGTCTACAAGGAAATATCCTTGCTTTTCAAATTCATCCCCAATCTCTTCATAAAG
TACCCCCAAGTTGTCGAAGTTTGTAGTTCCACAGATGTGATGGAAGTCAAATGCGACAAATCTCACGTTTGGAAGCCTCGCCATTTCGGTGGCG
TATGCTTTGCCTAATTCACCTTCAGCTCCATCCTGATCTGTTAGGTTAACTACCATAATTTCTCCATATCTTTGGCTAAGATCATGGAAGTGGC
GCTGCACGACCTTCGGCGTGTCTTCATGCTTATTTATCTTAAGCTGTGGCTTATAGCTCAAATCAACGATTTGCTCCCAAAGAAGTGGAATTGA
ACCTCGAACCTGCAGTAAAGAGAACTTGAAACCATTAATCTCCATTATTTGTTCAGATTCCACAAAATTAGCAGTGTCTCCCTCAAGATTGGCT
CCTCTTCTCCACATACGTGTACCTAGACGACGTGTACAGCGCCTGGAAATTAACGATATCACGGAAGGAGAATTCTTCAGCTGTAGCTCAGCAA
CTTGGTAGCTTCCTTGAAGCAGAGGGGTAATAAAACCATCCAGTTTGCATTCAATCAGTTCCTCCAAAAGATGCCAGTTCCAAACATATCGAGG
GTCAGCCTGCTTCCACATGGGCTTACTCGTCCAACCAACAGCTAGCTTGCACCTTCTTTGCAAGTTGACAGTTAGATCAGTCTCATAAGAAAAA
TACAGTCCTGGAGTAGTCTCAAGTGCCTGTAACAGGGTCCTGAAATAAGCTTCGTCCCTTCTTTCTTGAGCAGTAGCAAACCTCAAATTGGCAT
TGCAAGGTAGGAACTTCATAGCGGTAACTCGAAAAATGGGAAAACCAAGGAAAGTCCCAGCTTCCTCCCGAGATGTTATAACTAGCAAGTACGT
TCCTGCTAAGAGCCTAATAGTTCCTCCAACACCAAATATTGTAGACACTTTGGTCGCATTAACAGAACTAGTGTTGTCGTCGAGAGGTTTGATG
TTGCCGTCGCGGCGATCGACGGAGAAGCCTTCATGAGGCGAATCTACGGGTTTGATGACGTACTTATCGGGAAACTCGAGAAGCTGGAGGTGAT
CGTAGAGTTTGAATCTACTTGAAGATGGAGGACCGATCTCCATTAACGAGATTACGAGGGATATTCGAAAATTAATAAAAAAGATTGAATGAAG
GAAGATGATAAAGA |
Primers for UN16989 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
CGTTTAAGATGGAAACAGACGA |
59.267 |
22 |
TTCATCAAGCGGGAAGAAAC |
60.192 |
20 |
213 |
75 |
287 |
| 2 |
CGACGTTTAAGATGGAAACAGA |
59.267 |
22 |
TTCATCAAGCGGGAAGAAAC |
60.192 |
20 |
216 |
72 |
287 |
| 3 |
CGACGTTTAAGATGGAAACAGA |
59.267 |
22 |
TCAGCGTTGTTGATAGGTGG |
59.716 |
20 |
259 |
72 |
330 |
|
|
