 |
Simple sequence repeat (SSR)
>UN18842
GGACATATCGATTCTCTTCTTCTTCTCTTCCATTGAATCCGAAACCTCAACCTCGCTTTCTCTCATCACAGCTTCGTCTCTTCCCTTCCTCGTC
TTCTTGTATTTCATCTTTTCATCAAGTCTCTTCATATAAGAGAAGCAGGACAGTCTCGGCGCGGTACAGAGAAAAGCAAGAAGAAGAAGAAGCA
ATGACTATTAAACCGGCGGTTTGTATTTCCAATGGGAATCTAATCATAAAAAACCGGACGGTTCTAACCGGTTTACCAGACAACGTCATCACGA
CGTCATCCTCCGACGCGGGACCGGTCGAAGGAGTCTTCCTCGGAGCTGTATTCGACAAGGAAGAGAGCAACCACATCGTACCGATTGGTTCACT
TCACGAATCCCGGTTCATGGCTTGTTTCCGGTTCAAGCTCTGGTGGATGGCCCAGAGAATGGGTGAGCTCGGCCGCGACGTTCCTCTAGAAACT
CAGTTCCTATTGGTTGAATCCAACGACGGGTCCCACCTTGACGAGACAAACCAAAAACTCTACACCGTCTTCTTACCGTTAATCGAAGGCTCGT
TCCGTTCGTGTCTTCAAGGAAACGTTAACGATGAGGTGGAGCTCTGTTTGGAGAGCGGAGACGGCGACACCAAAACGTCGTCGTTCACTCACTC
TTTGTACATTCACGCCGGCACGGATCCGTTCAAGACGATAACGGACGCTATCCGCACCGTTAAGTTGCATCTCAAGAGTTTCCGTCAACGTCAC
GAGAAGAAGCTCCCGGGGATCGTTGACTACTTCGGGTGGTGCACTTGGGACGCGTTTTACCAGGAGGTGACTCAAGAAGGCGTGGAAGCTGGTC
TCGAGTCTCTAACCTCCGGCGACACGCCGCCGAAGTTCGTCATCATCGACGACGGGTGGCAATCCGTCGCGAAAGATGATGACCCGGTTGAGAA
CCCGGTTTTCCGGTTAACCGGGGTCAGGGAGAACGCGAAGTTCAAGAACAAGGATGAACCGACGCTAGGAATCAAGAACATTGTAGACATAGCT
AAAGAGTAGCACGGTTTGAAATATGTTTACGTGTGGCACGCGATCACGGGTTACTGGGGCGGGGTGCGACCCGGGGAGGAGTACGGGTCTTCGA
TGAAGTATCCGGTTGTGTCGAAAGGTGTGGTGGAGAACGAGCCCACGTGGAAGACGGATGCTATGGCGGTACAAGGGTTGGGTTTGGTTAACCC
GAAGAATGTGTATAGATTTTATAACGAGCTTCATGGTTACTTGGCTGATGCTGGTGTGGACGGTGTGAAAGTTGATGTGCAGTGTATATTGGAG
ACTTTGGGAGGTGGTTTAGGGGGTCGAGTCGAGTTAACGAGTCAGTATCATCAAGCTCTTGACTCCTCTGTTTCTAAGAACTTCCCTGATAATG
GGTGCATTGCTTGTATGAGCCATAATACGGATGCTCTCTACTGCTCGAAGCAAGCAGCTGTGATTAGAGCATCAGATGATTTCTACCCACGAGA
TCCGGTGTCTCACACCATACACATTGCCTCGGTTGCGTACAACAGTGTGTTCTTGGGAGAGTTTATGGTGCCTGACTGGGACATGTTTCATTCT
GTGCACCCTGCTGCAGAATACCATGCCTCTGCTAGGGCCATTAGTGGTGGACCTATTTATGTTAGTGATGCTCCTGGGAAGCACAACTTTGATC
TTCTAAGAAAGCTTGTGTTGCCTGATGGATCGATTCTTCGTGCTCGATTGCCTGGTAGACCAACACAAGATTGTTTATTCGCAGATCCTGCCCG
GGATGGTGTTAGCTTGCTAAAGATATGGAACATGAACAAATACACTGGAGTTCTTGGTGTGTACAACTGCCAAGGAGCAGCTTGGAGTAGCACG
GAAAGGAAAAACATCTTCCACCAGACACAAACTGAATGCATCACCGGCTCCATCCGTGGTCGTGATGTTCATTTGATATCCGAGGCCTCCACTG
ATCCAAAGACCTGGAACGGAGACTGTGCTGTTTACTCCCAAAGCAGAGGAGAACTCAGCGTTATGCCATACAATGTGTCTCTACCGATCTCACT
GAAGATCCGCGAGCATGAGATCTTCACTGTGAGTCCCATTACTCACCTAGCTAGTGATGGTGTCTCATTTGCTCCGCTCGGTCTTGTAAACATG
TACAATTCGGGAGGAGCTATCGAAGGACTTAGATATGACGTTGAGGAGATGAAAGTGGTAATGGAAGCCAAAGGGTGTGGTAAATTTGGAGCTT
ACTCATCTGTGAAGCCTAAGAGATGTGTTGTTGAGTCAAATGAAGTTGCATTTGAGTATGATGCCTCCTCTGGTTTGGTCACTTTTGAGTTGGA
AAAGATGCCTTCAGAGACCAAACGATTACATGCAATGGAAATTGAGTTATGATTTGATGAATTACAATATGATGAATCACAATTTGATGTATCA
ACACGGATATTACAATTTGATGTAACAACACGGTTATTAAAATTTCTTTCCATGTGATACAAACAAAGTAATAATAATATTTTTTTTAGTTCAA
AAGAATTACAGATATATATTTATTGGTTTAACAACTAACATGGTCACGCCAGTCCAAGAACAAGAGAGCAGCCGCATAGTGAGACAAGGCACCC
AACAAAACAAACACATGGAAGATCTGATGACTATGTCCCACACGATCAAACCAACCCGGTTTAAACCTCTCAGGCACTCTCCCTACATAGAACC
CTGTCCCAACAAGATAAAACACTGCCATAGCCAGCTCGTACATGAGCGTCACGTTCCTTTGCGGGTTTCCCCAGTTAACCACTAGCGCATGGAC
AGCTGGGACTATTCCGAAGAGCCCCATGGAGGCAAAAAGCAAAGCGCGAAAACCTCGGTACTTGGGAGAGGAGAGTGAGGGAGTGAAGAGTGTT
ATGATTGTGAAGATTCCCATAGAGGTGATGCCTGTGAGGTAGATGACGTACCAACGAGGAGTGCATTGGAAGATGTAGTACATTGCTGGGAAGA
AGGAAGTGATGATCATGACGGCTATACCGGTATAGTCTATGCGGAGGAGGAAGAGGTTAAGGTCTTTGGAGTGGCAGCAGAAGAGGTGACAAAT
GCTGCTTGAGAGTAGGCAGAACATTGAGCCCGCTAAGAATACAAAGAATGGCCATCTTGTTACATTCCCTGGACTCTTTGCATCCACGGGGAAT
AACTTATCGTGATGCATAACGTTGGCGACAGTAAGTGCCACAAATAAGATGAAACCTAGTAAATGTGTCCAAACGTTGAGGGACTCATTGTGGA
AACTGAAGACGCTGAAGAAAGCATCTCTAATGTTGATTATTTAAGACAATAACACTTTCTTTATGGTTCAAAGATCAATGGAAATAGAAGAGGG
GTGTGATCC |
Primers for UN18842 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
GCTTCGTCTCTTCCCTTCCT |
59.957 |
20 |
CCCATTGGAAATACAAACCG |
60.046 |
20 |
154 |
71 |
224 |
| 2 |
AGCTTCGTCTCTTCCCTTCC |
59.957 |
20 |
CCCATTGGAAATACAAACCG |
60.046 |
20 |
155 |
70 |
224 |
| 3 |
TTGAATCCGAAACCTCAACC |
59.91 |
20 |
CCCATTGGAAATACAAACCG |
60.046 |
20 |
192 |
33 |
224 |
|
|
