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Simple sequence repeat (SSR)
>UN21002
GGTGTCTCTCTCAATTATTAATGCTTCATTGTTAAGAAAAAAAAAGCCAAACAAATCCATAGTAGGGGGGAGAGGAAACAGTGTTATAACAACA
AAAAAAAAACTTCAGCCTCGGATTCAAAACAGAGATAACCTAAAAGGCTCAATATAGCAACTTAAAAGTTAACTTTTTCACATTGTTCATCAGA
AAGAAAGGATAAATTCACAACTCCATCGTTTTCTTTGTCACTTAAGCTCTCCTCTTCCCATCACTCGCTTGCTCAACGACCAGCGTTCAAGTTA
AAGAGCATGCTTTGTCCACCGGGTAAGTAGGCCACGTTCGGAGACCTAGCCAGTGTAGCTGCAACCTCCCTCGAGGCCTCAATCCTCCTGAGCT
CGATCAGCCCCATCCCTGCTTTAGCAGTTGCATCAGATATCAACTGAGCAGCTTCACTCTCACCTTCAGCTCTAATAACAGCCGCTCTCCTCTC
CTGATCAGCCTTCATCACCACAAACTTGGACCTCTCGGCTTCCTGCTGAGCCACTTGCTTCGCCTCCACAGCCCTCGAGAACTCCATACCGTAT
GACAAGTGCGTGATGGCAACATCGTCGAGCTCAATGTTAAAGTCCCTAGCACGCTTGATGAGAGAGTCACGGACAAGTGCCGACACTTGAGGAC
GCTCTGTGAGGAGCTGATCAGCATTGAACTGAGCAACCACAGCCTTCAAGACCTCGTTTCCAATGGAAGGAAGAACCTTTTCGTCGTACTCGAG
ACCCAATGTTTGAAAAATGGTGGGCGGACGCGAAACCTCGGGGCGAGAAAGAACACGAAGGGTGAGATTAACCATCTGGAGATCCTTGGTACCG
GACACGGAGGAGAAAGTGTGTGGCTTCGTGCGGATGTCGAAGATGTGAGGCCTCTGGAGAATGGGTATCAGGAAGTGAGTCCCTTCACCGACGG
TCTGATCCAACACTCCTCGGAACCGATCGAACAGCACCGCTCTCTCGCCACCATCGACAGTGTAGAGCGACGAGGACAGAACCGTCGCAGACAC
TCCGAGACCGAAGGCCGCCTTCGCTAAATTCGTGAGGAAAGAAACCGCTGCTTGACTTCCCATCTTGCTCCCCAAGAAAAAAATTAAGAAATGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCGACTGGGTAAGCTGTGCTCGAAGCCCTAGCAAACCTCGGCCTCCTTCTCCTCTTTTTCC
TCGTCGGCCTCCTTCTCTTCTTCTCCCTCGTCGGCCTCCTTCTCTTCTTCTTCCTCGCCGGCCACCTGCTCTTCTTCTCTTCTTCTTTCTCTAA
ACTCTCTGATTTTCGATTTATCTCTTCATATTCATGCTAAGAATTGCTAGATCTGTGTTGTGGTTGTCGAAATCTGATAGATTAAGGTTCTCTG
ATTTTATTTCTGTCTTTAAACTTGCTGAAAAAGTTGTCGATTTGATGTGATCTGTTTCTGAAAAAGCTGTCGGGTTAATCTGTTCCTTATTGCT
CCAATATACTTGTCTTTGGTTGAATTCAAAATTGATCTGAGAAGTTTGGGTTTGATTTTTGTTTTGATCTGTTACGCTTCTTTTCTATTTTCTG
TTTCTGATTATCAATCTGATTTATTAAGATTTTAATTGTAGTTTTGAATCTGTTTCTGTTGGCAAGTTGATTGTTTTTGCTTTCTTTTGAATTT
CCTATTGCTGTGTGTTGCTTTACGATCTCTACTTCGCAATCACATTCACAGGAAAACTTGCTTTTTGATGTTCAAGAAAATCTGAAAGTATGGT
TTTGGATTCAGCGCCTTGTCCCAACAAGTAGTGGCCAGAACAGAAGCTTGTGAAGGATGGTTTCATCATCAGACACCAACCAAGATCCACTGTC
CTGAAAAATACCGAGAGTCAAAGAAGATTGACAAGTACATGTATCAGAGTCGAAAAGATGACAGAAGATGACAGAGAACATCAGAGAGTCATGG
ATGCTTAGTTAGCTTAGCTATATGTTTGGCTATTTTAATTGTCGTAGTTTTT |
Primers for UN21002 SSR
Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
1 |
GAAAGAAACCGCTGCTTGAC |
60 |
20 |
AAGAAGAGAAGGAGGCCGAC |
59.957 |
20 |
174 |
1071 |
1244 |
2 |
GAAAGAAACCGCTGCTTGAC |
60 |
20 |
AAGAAGAGAAGGAGGCCGAC |
59.957 |
20 |
201 |
1071 |
1271 |
3 |
CCATCGACAGTGTAGAGCGA |
60.008 |
20 |
AAGAAGAGAAGGAGGCCGAC |
59.957 |
20 |
254 |
991 |
1244 |
|
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