 |
Simple sequence repeat (SSR)
>UN21608
GGGTATCACAATAAAAACCATCTCATGTTCTTGTGTGCATATGTAAACCATTTCTTTTATAGATTCCTTCACTTTCTCGGGAAACAACAACCAG
ATCAAACAAACAAACCTACCACCACCGTGAACATGTCAGGACTCGACGGCGTAGAGCACAAAACCCTCAAAGTAAACGGCATAAACATGCACGT
GGCCGAGCTTCCCGGATCCGGATCTGGAGGAGACCCGATCATCCTCTTCATCCACGGATTCCCTGAGCTTTGGTACACGTGGCGGCACCAGATG
ACTGCGCTTTCGTCCCTAGGGTACCGTACCATCGCGCCGGATCTTAGAGGATACGGAGACACAGACGCGCCGGAGAAAGTGGAGGACTATACTT
ACTTCAACATGGTCGGAGACTTGGTGGCACTCATCGACGCAGTGACCGGTGGAGACGAGCCGGTTTTCGTGGTGGGTCATGACTGGGGAGCGAT
GATCGCGTGGCAGTTGTGTATGTACCGACCAGAGAAAGTCAAGGCACTGGTCAACATGAGTGTCCTCTTCTCTCCGAGGAACCCAGATCGTGTC
CCGATTCCGACCTTGAGACGTTTCCTTGGTGACGATTATTACATCTGCAGGTTTCAGAAACCTGGAGAGATAGAAGCAGAGTTCGAAACATTGG
GAACAGAGAAGGTGTTGAAAGATTTCTTAACCTACAAAACGCCTGGACCGCTTTACCTCCCCAAAGGCAAACTCTTCAAAAGCTCAGAAAACGG
TGGTGCGTCTTCTGCGTTACCACCGTGGCTAACACAAGAAGACCTCGACTATTACGTCACCAAGTACGAGAACAAAGGCTTCACTGGACCAATT
AACTACTACCGCAACATTGACCGAAATTGGGAGCTGACTGCACCTTGGACCGGTGCTAAGATTGGTGTACCGGTGAAGTTCATAGTAGGAGATC
AGGATTTGACGTACAATTCGCCGGGGGCTAAGGAGTACATCAACGGTGGGGGATTCAAGAAAGACGTACCGTTGCTTGATGAAACCGTAGTGCT
CAAGGGAGTGGGACATTTCCTCCACGAGGAGAAGCCTGAGGAGATCAATCAACACATTCACAGCTTCTTCCAAAAGTTTCTCTAAAAATCAAAA
ATCTACTTTTATTTAAATAAATGAAAAACGGATTTAACGTCTTTGTGTTTTACAACATTACATTTTAGTATTTTTTACATAAATGTGCTTGTTC
AATGAGATTTCAAATATATCGGATAAATAAAAAAGCCCGGGGAATAATCAAACGAAAGTGGATTAAACCAGAAATAACCATGAAAAATATAAAG
CTGAGAATTTAAAACCGGTTAAGACAATGCCAAAAGGAAGAAGCAATTGTCTCAGAAAGATGGTTTTGTTTTTTTTATTTGAGATACAAATACA
AAGGATACACACAATAATTGACAAATGCAGAGATTCCATGAGAATGTGATTCAGAGAGAAGAGGATGATGCTTGGTCACGCGCTGCTATAAGGT
TCTTGGCGTGATCAGCATTGCAGTAGACGAAGCTCTTTTTACCAGTTCCTGTGACAGTTTCAACAGCGGAGAATCCAACGTAGTCTTCATCACA
CTTCTTCTCGCAGATTTCAGCCATGATCTTGAACATCTCCTTCTTCTGGTTCCATGGCTGATCTACGTATTCTTTGATCGGCATCCACTTAGCT
TCCAAGATCTCAGATTTTTGTTCAGTGATATCGTAGGAGCGTGGAGCCAAGACGCACAGGAAAAACAGATCCGTTTTCTGTTTCAAGAATGCTT
TGTGGCTTTGCCTGAAGGACAACACTTCAACAAAATCTGCGATAATACCAGTTTCTTCTTCCACTTCCCTAGCTACTCCATCGCAAATATCCTC
ACCCTCGTGGATAACACCAGTAGGGAGCTTCCAGACATTTTTGTCTCTGAAATAACCGCTCTTTTCCTGGACAACGAGGACCTCACGAGTGGCT
TTGTTGAGGACAAGAGCACCAACACCAACAATGTGAGAAGCATTGGCAGGGATCGTGTCAGGGGTGTTAGAGATCCAAGACACAAGCATCAAGT
ACTCTGGCTCTGCGTGATGATATCTAAACCCTTCACTAACTGCAGATTCAACAAGGTTAGCTAAACCAAGAGGTAGCTTTATCCAAATCCCCCT
CTTCCCCTCTTGTCTCCAATGGGAAAGAGAAGCCCTGAGCCTATGGGTGAAAACTTCAGCATCCATTGGTTCATTCATGGTCACCGTAACGCCA
TCGTAATTGTCTGTCTCCCCGATAAGTATATCCATCTCTCTCTCTCTCTCTCTCTCAAGCAAATCTAAAAACCAGACACGACTTTGCTTTGATT
AATCAAATTCGAACTGTGTCTCGAGAAGAGGATATAGACTTTGCTTTGATTCGTCATTTTTGTTTTTGTCTATTTGTAACTGAAAAAA |
Primers for UN21608 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
TTCCCCTCTTGTCTCCAATG |
60.042 |
20 |
CAAAGCAAAGTCGTGTCTGG |
59.485 |
20 |
184 |
2164 |
2347 |
| 2 |
CCTGAGCCTATGGGTGAAAA |
60.066 |
20 |
CAAAGCAAAGTCGTGTCTGG |
59.485 |
20 |
152 |
2196 |
2347 |
| 3 |
TATCCAAATCCCCCTCTTCC |
60.089 |
20 |
CAAAGCAAAGTCGTGTCTGG |
59.485 |
20 |
200 |
2148 |
2347 |
|
|
