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Simple sequence repeat (SSR)
>UN23676
TTTTTTCTAAAGACTCGCTCACAGTTCCATCTCCCTCCACTCTCTTCTCCGATCCGAACTCGGTGTAACAAGATTGGATTAAGAAAAAAAAAAA
AAAAAGCAGCCATGTCAAGTTTTATAATGGCCACACCGTTTCCAGGATCTCTCACTCAATGCAAGAAAACGAATAACCTGTCCCTTCAGAGAGC
CTTTAAGGTAACATGTATGCAGACACCGTTGGAGGAGCTATACAACGTCAAAGTGGAACGGAAAGTGTCACAGAGACGGTTAGAGGAGCTAGGG
GTTTCGAGATGGTCAGTTTGGAAGACTGGGAAATGCAAACTGCCGTGGGACTGGCAGGTGGATCAGTTGGTTTACATCGAAGAAGGAGAGGTTC
GTGTCGTCCCCGAAGGCAGCAAGAGGTTTATGCAGTTTTTGGCTGGAGATCTTGTTAGGTACCCGAAATGGTTGGAGGCTGATCTTTTCTTCAA
CGCTCCTTACCGCGAACGGTATTGTTTCAAGGCCTATGGTGATGACTGATGATTGATTCAGATGTAGAGTTTTGAGTTTAGAGCCCCCATGAAT
GTTTTACACTTATGTGTTGTTGTTGTTGTTGTAGTCTTATGGATCTTTTTGGGGATGATAAAATAACAAAACAATTTCTCTTATTCTTCTTCAG
AAATTTGTGTAACGCTTACATAAAGTAAACAGAGCATAAATCTATGTGCGGATGAAGAAATC |
Primers for UN23676 SSR
Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
1 |
CGAAGAAGGAGAGGTTCGTG |
59.982 |
20 |
ATCATCCCCAAAAAGATCCA |
59.175 |
20 |
264 |
360 |
623 |
2 |
CGAAGAAGGAGAGGTTCGTG |
59.982 |
20 |
TCATCCCCAAAAAGATCCAT |
59.175 |
20 |
263 |
360 |
622 |
3 |
CTTACCGCGAACGGTATTGT |
60.018 |
20 |
ATCATCCCCAAAAAGATCCA |
59.175 |
20 |
148 |
476 |
623 |
|
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