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Simple sequence repeat (SSR)
>UN23872
GGATAATTGATTTTAAATAAATAATTTTCTAAGAAACAAAAAAAAAATGCAGAGAGAGAGAAGGAGAAGACGACAGGAGAGAGAGACGACCATA
TTGTCAATAGAGAGAGAGAGAGAAGAAGAAGGAGAAAGACGGAGACAACAATGGCGGAAGAAAATGGGGAGAAGAACGAAGGAGGTGAAGAAGA
AGAGAGCGTTAAGGTTTTCGTCGGGCAAATACCGAAACACATGTCGGAATCTCAGCTCCTTACATTGTTTCAAGAGTTCGCTGTCGTCGAGGAG
GTTAACATCATCAAGGACAAGATCACACGCGCCTCTCGAGGATGTTGTTTTGTAATATGTCCATCGAGAGAAGAAGCAGATAAGCTGGTCAATG
CTTGCCATAACAAGAAGACATTACCTGGTGCAGCTAGTCTATTGCAAGTAAAGTACGCAGATGGCGAACTGGAAAGGCTAGAGCACAAGCTTTT
TGTTGGTATGCTTCCAAAGAATGTCTCTGAAGCTGAACTTCTAACTTTATTCTCCAAGTATGGGACCATAAAGGATCTACAGATTCTAAGAGGT
GCTCAACAAACAAGCAAAGGCTGTGCTTTTCTCAAGTATGAGACAAAAGAACAAGCTGTTTCTGCCATGGAAGCCATCAATGGAATACACAAAA
TGGAGGGTTCAACTGTTCCTTTAGTTGTCAAATGGGCAGACACAGAAAGGGAAAGACACACAAGAAGACTTCAAAAGGCTCAATCTCACATCGC
TAGAATAGCTAACGCTGACCCAACAAACCCCTCTTTGTTTGGAGCATTGCCCATGAGTTATGCTCCACCATATAATGGATATGGTTACCATCAG
GCTCCTGGAACTTATGGTTACATGCTACCACCAATTCAGAGCCAAGCTCCATTACCCGGTATAGGTAATAGCAACGCGTTGCAAAGAACGTCAC
CTGACTCTGTGCCACCTCGCTTGGCCCGTAGAAACATTCCTTTGCCTCCAGCGAACTACATGGGCTCTGGTTATCCTCCTGTAAGAGGTCTCCC
TTATCCATTGGCTTATCCCAGATGGATTATGAATCCTCGCCCTCTAAGTAGCTCTCCTGGATCCATATCACCTGGCGGGTCAACACCTCTAGGA
ATTGGTTTGAGTTCCGTGGTTCAAACTCAAACCGAAGGTCCGGAAGGTGCTAATCTGTTTATATATAATATACCTCGTGAATATGGGGATCAAG
AACTCGCGGCTGCGTTTCAACCTTACGGTATTGTTCTGAGCGCAAAGGTGTTTGTAGACAAAGCCACTGGTGTAAGCAAATGTTTTGGTTTTGT
TAGTTATGACTCACAAGCAGCCGCTCAGAACGCTATTAACATGATGAATGGTCGCCATTTAGGCGGTAAGAAATTGAAAGTCCAGCTTAAGAGA
GACAACAACAACAACAACAACAATGGTCAACAGAGTAGTTAAAACGCCTTAAAACTCTCCTCAACTACAAAATTTCATGACGAAAAACAAAAGG
TCGGGTAATGGGTCGACCCGTTTCAAGATTGGGACTAATCTTGAATGCATGCAGCTGTGTATAACTCCAAAACTCTCAAACCAAATCAAAACCT
GTAACTTCCTCTGCAAGTGGATCATCTTTTTCTTTTTTATTTTATTTCTTCAAAATAACAATTTGTAATTTATGCATCATTGAAATTCATGTAG
ACATTTTATGATTTATTAACATTAAATTCATTGAACTTTT |
Primers for UN23872 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
GACGACAGGAGAGAGAGACGA |
59.723 |
21 |
AAGGAGCTGAGATTCCGACA |
59.95 |
20 |
181 |
69 |
249 |
| 2 |
GACGACAGGAGAGAGAGACGA |
59.723 |
21 |
CGACGAAAACCTTAACGCTC |
59.883 |
20 |
143 |
69 |
211 |
| 3 |
GACGACAGGAGAGAGAGACGA |
59.723 |
21 |
GCGTGTGATCTTGTCCTTGA |
59.837 |
20 |
244 |
69 |
312 |
|
|
