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Simple sequence repeat (SSR)
>UN24386
CCAAGTTTTAATTATCTCAATAAACACCTTATGTTCATGTACAATAATGATTTATAGAGATGCTACGTTGAATTCACTCCGTATACACTCTAAA
ATACATGTTCTTCGTGGCGTATGTAACTATCAACAAGTCACCATGAAAGAGCTCCTGACCGCAACTCTGACCGCACCAACCACACTCAGTTGCC
TTGTCTCCGGCCTCAGATCTTTACTTTCAGTATCTCTGCAACTTGCTTCCATCTGAACCCCTACAAAATATGCTGTCTTGCCTGAAGCATTACG
AACTGGCGATATATGAAGAAGATTCCAGAACGTGCTCTTATCTTTTCTGTTACTGTAATTTAATATTTGCACTGTGCATGGTTTCCCCTTTAAA
ATGCATTCCTTCATCTCGTAGAGTACCGAGGAATCTGTATCAACCCCACTCAGAAATCTACAATTCTGTCCCAACACTTCATGTCTCTTGTAAC
CAGTCAATGTCAAAAAGGCATCACTAGCATAAACGATAGGCATGTCTGGTAAGCACGGATTGGTTAATACGAAACTATGTTTGATTCTACCGAG
TGATATAACTAACGAGGAGCTTAAGCAGTAATCTGATCCACGCAAACAGTTCCGCTTCCCACATACTAATCTGCCAGCAAACTCGCTGTACCGC
GTCAGAGTAGCTAACACATTGCTAACTGCTTCAGCAGATTTAAGCTTCTCGGATTCACTAGCTTCACAATGTTCCCAGTTCTCTAACTCTTGTT
CATCGCATTCCACTGGTAAAGCTCGTTCCTCCTGATGCACGTAACTACCCAAGCAAACCTCTCTCCGACAAGAACCAAACACCATTTCCGAACG
ACCCGACACATCTCCCCTCATGTTCTGTCCCGAAATGGGGACCTGAACGGCGACGAAATGGACCACTCTCCCATCGTCACTCCCGAACACAGGG
ATCATATGGAACAGCATCCAAAACGGAGATCCGGATTTGCGGTAATTCAAGAGGCTCACCTGAACGGGCCTCTCCTCGCGAATCGCCTCGCGGA
TCTCCATGATCGATCTCCGGTTGGTCTTGGGACCCTGGAACGCCCTCCCGTTTCTCCCGATGACCTCTTCCCGAGAGTACCCGGTCATCTTGAG
GAACCCGGGGCTGGCGAAAACGATCGGGTGGCCCGAGATAAACGGGTCGGTGATCGTGAAACTGTGCGGAAGCTCGTCTAACGCTTCTCTGATC
CATAACGAGTGACAACGAGCGTTGTTAAAGGCTCCTCCTTCTTTCTCCTCGGTGGTGGCGGCGGTGAAGAGCGATGCTGGAGATTGGGTTATGG
ACATAGTCGTAGCGAACTGGTATCACTGTTCTTCTTCTTCTTCTTCGTCTTCTACTATTCAGTGCCAATCCCATGTGGGTTCTAGAGCGAAAAG
TTTAAACCTTTCTTCTTGGGTTTGATCGGAACACGAAAACCCCAGATTACAATTTCAATCGGGAGTCTAGAAAACCCATTGGAAAAGAAAAAAA
AAATTGAAGCTTTACACAATTTCGGATAAGAAGGAAGAGAAAGAGAAACACACAGCGATGATAGTGAAGTAAGAAGAAGAAGAAGAAGAGACAG
ACAGCGTCAATTGATGTAATCTTTGTAGGAAGAAATTTCTTCTTCTTCTTGCTTCTGTTCTCTCTC |
Primers for UN24386 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
TTCTTCTTGGGTTTGATCGG |
60.044 |
20 |
GATTACATCAATTGACGCTGTCT |
58.277 |
23 |
200 |
1420 |
1619 |
| 2 |
CTTCTTGGGTTTGATCGGAA |
60.044 |
20 |
GATTACATCAATTGACGCTGTCT |
58.277 |
23 |
198 |
1422 |
1619 |
| 3 |
CTTCTTGGGTTTGATCGGAA |
60.044 |
20 |
GAGAACAGAAGCAAGAAGAAGAAGA |
59.844 |
25 |
239 |
1422 |
1660 |
|
|
