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Simple sequence repeat (SSR)
>UN39899
GCTGAAAAACGCGTTTATTAAAAACGTTTATGACACGATCAAAACGTTTGATTTCAGTTTCAAGAAAAAAAAAGAAAACACGTAACAACATTCA
TAACCAACTCTCTCTCAAAAAAAAAGATGCATTTGAAGACATTATTGTAACTTGTTCTATCAAGATCACATCTTGGCTTCTCTAGCAGCCATCG
CTTCTTCTTCTTCTTGACACTAGCAGACTTGTAACCACCTTTGCACGGCTTCCCCCAAGGGCTAACCGACGTCCTACCTCTGCTTCCACTACTT
TTGATCTTTCCTTCACCACCACCATGTGGATGATCACACGGATTCATCGCCACACCTCTCACTTTGGGTCTTATCCCCAGCCACCTACTCTGTC
CTGCTTTATACAGCTTCTTCACTCCATGAGACGGGGTTCGACACTGTACCGATGGTAGCACGGCACCTGGCGTTGATCCACCTGGTGTCACCTG
AAGGGAGCTTGATCAAGCACTTCCCTGAAGCAGGCTCCTTGAGGATCTTGGCGTTTGTTCCCGCAGCTCGTACTAGCTTGGCGCCTTGACCAGG
GTTCATCTCGATGTTGTGGATGATTGTTCCTATGCGCATCATTCCTAGCGGCATGGAACTTCCTATCATTGAGTTGATGTCCATGTGGAGCATC
TTTTCTTCCATTTCTGCCACCAGTGTTTTGTTCTGCACATCACCAAAAGCTGTGGAGAAGCTGCGAAATGCTGGACGCACAAGGCTGTTGAATA
AAGAAGAAGAAGAAGAAGAAGAAGCTCGAGCTCTACATAGCGCCACAAGGGCAGACATGGGAGTTGATTGAGCGAGAGAAAAGTAAAGTTTTTT
TTTCTTTTTTGCACTCTCTATCTCCA |
Primers for UN39899 SSR
Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
1 |
TCACATCTTGGCTTCTCTAGCA |
60.154 |
22 |
ACCCAAAGTGAGAGGTGTGG |
60.002 |
20 |
192 |
160 |
351 |
2 |
TCACATCTTGGCTTCTCTAGCA |
60.154 |
22 |
GTGGAAGCAGAGGTAGGACG |
59.867 |
20 |
118 |
160 |
277 |
3 |
TCACATCTTGGCTTCTCTAGCA |
60.154 |
22 |
ATCGGTACAGTGTCGAACCC |
59.851 |
20 |
270 |
160 |
429 |
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