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Simple sequence repeat (SSR)
>UN40293
GCACGAGGCTTGGTCTCTTCCGTCTTCCATCGGCTCTTCTGATTACATCGGAAGAGTGTTTGGATAGATTGATGTGAGTGGGGCAATTGAACGT
TCGGTGCATGAGTGGTAATTGGATAGCTAGTGTTTGTAGGCTCCCTGCTCGCGCAGCCAACTACAGACCAACTATCCTTCTCAGTTGGTTCACG
AGCATATTTATGCTCGTTGACTTGATCCGGGGCCTGTGTTGCGTACCTATCAGAAAGGAATTGCTAAGCTTTGCTTAAAATATTGTTCGCGGCT
TCTCCTTCGTTGGGGAAATCGTGAACACAAAAGCCGGCACTTGTGATCCTCTCGTCTTTGCATGATATATGCATTGTTCGCAAAGGTGAATAAG
CTGTTGGCTGAGATCTCGGTTGCGGAAGCGTTATGGCGGTGACTCGAAGCAATTCTTGTCCTGCTAAGCACGTTTGTCTCCGGACAAAAGATGA
CGGTCAAGTCCACGTCTGTTCCCCCTTTCCTTGTGTTTGCGGGGATATGACGTGGTCTTGCCGTGATTTATGAATGCTACCTGGTTGATCCTGC
CAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACGAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGT
TATAGTTTGTTTGATGGTAACTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATT
TATTAGATAAAAGGCAACGCGGGCTCTGCCCGTTGCTCTGAGATCAGATGATTCATGATAACTCGACGGATCGCATGGCCTTTGTGCTGGCGAC
GCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTAACGGGTGACGGAGAATTAGGGTTCGATTCCG
GAGAGGGAGCCTGAGAAACGGCTACGATGATTGATGTGGATGCTATTGAAGATGATGTTATCGAATCATCCGCAAGTGCTTTTGCTGAAGCTAA
GAGCAAATCAACAGGTGCACGTCGGAGGTCGTTGATGGTTGATGTAGAGTCAGGTGGTTTGACGAGATTGTCTGCCAACAAACGCAGAAGGATT
CCTCCTAACCAACCTGTCATCGACTGTGAGCATGTCTCTGTAGATGTGAGAGAGTCTAGCCCAAAGCCTCCACCACCACCACCAGAGGAGCCAA
AGTTTTCTTGTCCGATTTGTATGTGCCCGTTCACCGAGGAGACGTCAACCAAATGCGGTCACATCTTCTGCAAGGGATGTATAAAGACGGCAAT
ATCTCGCCAAGCCAAATGCCCTACTTGTAGGAAAAGGGTGACTGTTAAAGAGCTGATTCGCGTATTCCTTCCAACCACCAGATGAATATACATC
AAAGTCACCAGTCACCTTGTCTAACAGCTCTATCCTCGAATTCGCCTTGGAACATATGGAGGGACTTCAGTGACTTGGTGTTTTAGTTCGAATG
TTTCACTTTATTGGAAGAGAAATATTCATTGTTTAAGAAGGCCCTATCATTTAATGGATATCATTGGTAATATTGGATTTGTTCTGTTTCCTAG
TTGTTGTTTATGTAATTTAGGTACCTGCAAACATTTCAGACGATGCCTTAC |
Primers for UN40293 SSR
Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
1 |
CCAACAAACGCAGAAGGATT |
60.11 |
20 |
ATTTGGTTGACGTCTCCTCG |
60.111 |
20 |
168 |
1109 |
1276 |
2 |
CCAACAAACGCAGAAGGATT |
60.11 |
20 |
GCATTTGGTTGACGTCTCCT |
60.119 |
20 |
170 |
1109 |
1278 |
3 |
TGTTATCGAATCATCCGCAA |
60.035 |
20 |
TCGGACAAGAAAACTTTGGC |
60.227 |
20 |
242 |
996 |
1237 |
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