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Simple sequence repeat (SSR)
>UN40909
AACAACCCCTTGAGATTTCCGAAGATCACCAATCAAAACCCTAAGAAAGCGAGTGGGCAGTTCAAGATGGCTTCTTCGAAAAGAATCAACAAGG
AGCTTAGGGACCTCCAAAGGGATCCTCCTGTCTCATGCAGTGCTGGTCCTGTGGGTGATGATATGTTCCACTGGCAAGCGACTATAATGGGTCC
AACTGGTAGCCCATTCTCTGGAGGTGTTTTTCTTGTTTCCATTCACTTCCCACCTGATTATCCCTTCAAGCCACCAAAGGTTTCTTTCCGCACC
AAGGTTTATCACCCTAATATCAACAGTAACGGCAGCATCTGTCTTGACATTCTGAAAGAGCAGTGGAGCCCTGCACTTACCATATCCAAGGTTC
TTCTGTCGATTTGCTTGCTACTTACAGATCCAAACCCTGATGATCCTCTGGTTCCAGAAATAGCTCATATCTACAAGACAGACCGAGTCAAGTA
CGAGAGCACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGATGATTGGCAATAATAATCTGCACCAATACATTGCGCATCGTC
TTAAGAATAAGTTTGAAAAAAAAAAAAAAAACAGAGTGTGGCGTTTGCTTGGTTGCTTTATTAGTTTTATACATCTTAAGCCAGTGTGTTGGTT
GGCGTACTGTACATGAGCTTTATATTGAGACATTTTGAGAGCTTGCAATGCTTTAAAGCCCAATAATTGTCGTCTATTAACGGTTATGATGAGT
CGCTCTCTCTCTCTCTCTCT |
Primers for UN40909 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
CGATCCTGGACCCAGAAGTA |
60.065 |
20 |
ACAGTACGCCAACCAACACA |
60.072 |
20 |
185 |
484 |
668 |
| 2 |
CGATCCTGGACCCAGAAGTA |
60.065 |
20 |
CAGTACGCCAACCAACACAC |
60.072 |
20 |
184 |
484 |
667 |
| 3 |
CGATCCTGGACCCAGAAGTA |
60.065 |
20 |
GTACGCCAACCAACACACTG |
60.072 |
20 |
182 |
484 |
665 |
|
|
