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Simple sequence repeat (SSR)
>UN03680
GGACAGCCTTTCAACCCCAAAGCGTCTCTCTTCATCTTCTTTCTCTTTCGTTTTTTTCTTAAATCGAAAAACCCTTCAATTATACATAATTGGA
TCTGTTCTTCTTCTTCTTCATAAACCGTCCCAAAGAGGATAAAGTCTGTTTTTTTCTGCAGAGAATCCTCCTTCAGCAACTGGGTTTTGAAGTT
CTCTACGAAACTTGATTTGGGTTGAATTTGGTGAAAAAGGGCATATCTTGTGTTCGATGATATTCCCCAGGGAAAGAAAAGGCGAAGACTTTTG
ATTCTTTTTTGTATTTGGGTTTTGTGTGGAATAGAGAGAGAGAGAGATGGCAGGTGGTGAAGATTGGATAGAACTCAAGTTTAGACTCGCAGAT
GGCACTGACATAGGTCCCACCAAGTACAATCAATCTATGACTGTTTCTTCTCTCAAAGAGAAGATCATCTCTCAATGGCCTAAAGAGTCAGAAA
ACATTCCAAAGACTGTAAATGATGTGAAGCTCATCAATGCCGGGAAGATACTAGACAACAATAGGACACTTGCTGAGTCCAGGCTTCCCGTTGG
CGAACTTCCCGGAATGGTCATCACTATGCATGTTGTTCTTCGCCCTCCTACTTTAGACAAAAAGAGCGAAAAACTGCAGAATGATCCTCCCATG
AAGAATCGATGCGCATGCACCATTTTGTAGCTGCAAGTAAATTGGATCATATAGAGAGATTTTAATCCTTCATGATAAAATAGCACTGGGTTGT
GATGCTCCATGGAACAGCTGAGAAAGTTCCCTTACTGGCATAGACGTGAAAAAAAAAGAAACAAAGGATCTTCACTACAGAACTTGTTTACATT
TGTGTGGTTGATAATTTATTTTTCATCTTTTCTTCATTGTTTATCCAAAGTGGCTCAAGAAAATGTACTACAATTCTTGAAGGAAATTGGTTTT
TAAATT |
Primers for UN03680 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
GAATTTGGTGAAAAAGGGCA |
59.916 |
20 |
CAGTGCCATCTGCGAGTCTA |
60.16 |
20 |
172 |
212 |
383 |
| 2 |
TGAATTTGGTGAAAAAGGGC |
59.916 |
20 |
CAGTGCCATCTGCGAGTCTA |
60.16 |
20 |
173 |
211 |
383 |
| 3 |
GGGAAAGAAAAGGCGAAGAC |
60.187 |
20 |
CAGTGCCATCTGCGAGTCTA |
60.16 |
20 |
126 |
258 |
383 |
|
|
