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Simple sequence repeat (SSR)
>UN43844
TTGAAAAACCAAATGAAAAAGTTGCAGAGCTTTTCACCCTCGCTAAGACAACAGAACCAGGCTCAGGAATAAGCCCATGTGCCTTGTGGCCCGT
AACTTCCACAATAGCTCTCTGCAATAAGCAATTAAAATGAGCATTTACATTGGCCGAAAAAGCATATCCCAAGAAGCTATGCAGAGAGAGAGAG
ACCTGGTCAGGAGAGTCGGGAAGAGAAGAAACAATCCGACGAGATCCAGTGAGGGAAGCGTAGATTGTTTTGTCGTTGACGTAAGCTCCTTTGC
CGGCTTTAAACTCAGCCACATTCCCAAGTACATCTCCAGGCGTTACTATGTCCGTCATTTCAAGAGATTTCGACTGAGACAGTGAACAAGTAAA
TCCGAATTAGAGACAGTGAGTAAATTAAAATTATAGGCTATACAGAAAAAAATACTGAGAGCAACCCATAAATACTAAAACTTTATTACTTCTT
GCACACAAAAAAAATGTCCAGACCAGATAATTTGTTACATTAACGAGGAAAGCAAAGACACATACAGCTCAATAAACCCTAAAGGTGAACTCAT
GGATTACACAAATCACTAAACATATCATATCTTTAAGAGAGAGATTAGCCTCTAAAAGCAGACCCACATACATGGGATTCGCAGAAACGAGAAA
AGGAACTCTTGGAACTTGGAAGCGTACCTGTTGATAACGAGGAAGAAGAGTACAAGGCAGAACACAAAATTATTACTATCC |
Primers for UN43844 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
AGGCTCAGGAATAAGCCCAT |
60.06 |
20 |
ACGGACATAGTAACGCCTGG |
60.015 |
20 |
279 |
59 |
337 |
| 2 |
TTTACATTGGCCGAAAAAGC |
60.075 |
20 |
ACGGACATAGTAACGCCTGG |
60.015 |
20 |
200 |
138 |
337 |
| 3 |
AGGCTCAGGAATAAGCCCAT |
60.06 |
20 |
TCTCTTCCCGACTCTCCTGA |
60.064 |
20 |
156 |
59 |
214 |
|
|
