RadishBase

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Simple sequence repeat (SSR)

>UN04022
AATTTGTATGCTTAATTTAAAAATGTCAAGTAATATAAATGAGAGAGTAAATGCTAAAAAAATTGTTATTGCTTGTCAAATGAATATAACTCGG
TTTCTATGCACAACAGATGCCTCAGCAAATGATATACAAATAATTATGATTCTTTTGTTTGTGCAACTAAGTACTGCTGCAAATGGCTGTTTCT
CTTCTTGTTCTTGAGCTTCCTGAAAGCAGAGGACTCGATCTGCCTCACTCTCTCCCGGCTCACACCCATCGTCTCACCAATCTCTTGCAACGTC
TTCATCCTCCCATCCTCCATCCCAAAACTCCAGCGTATCACCTGCTTCTTCCTCGTACCCAACGGGTCCAGTACTTTGTCCAAGTCCTGCCTCA
TGAACTGCTTCATCAGTATATCCTCTGAGGTTTCCGCTTCAGGGTCTGATATCACTTCCGAAGGTTTGAGGTTTAGATTGATCCCGATCTTCTG
GTCTAGCGACCTTGGAGGCTTAGGAGCGAGTAGAACCGCCATGAGCCTCTTCATCGACAACCCAGTAGCCTCTGCAACTTCTTCGTTCTTTGGT
TGCATACCTGTTTCACTATACAGTTGCTTTCTTGCCTCTTTCACACGGTATGTTGCTTCCACCATGTGAAAAGGCAATCTTATCATTCTGGACT
GATCAGAGAGAGACTTCCTCACTGCTTGCTTGATCCACCAATGTGCATAAGTTGAAAATTTAAATCCCTTTGTCGCATCAAACTTCTCTGCTCC
CCTCACAAGCCCTCTGCATCCTTCCTGGACGAGATCTTGGAAGTCCATTCCAGCTCCTTGGTAGTTCTTTGCAATCGAAATGACCAAACGAATG
TTGCTTTTAATCATTCTGTCCTTGCACTGTGTGCCGTGAGTTATACGTTTTCTTAAAGTCTTTTGATCGACTCCAGCAGCAGAAGCCCACTGTG
AAAAGGTTGGCTGGTGGCCACAACGCTCAGTAAGCTCTGCTTGAAGTCTTTCCAACTTCAGAAGGTCCTGTATGCCTTCAGAAAGCTGTTGTTC
TTCTCTGGCAGTGAGAAGCTTGGAGCTGCTCGTTGTCATTCTCAGATAACGCAAAGGATCATTATGGTCAATCTCCTGTGAAGCAACACGTTTC
TTTCTAGAGCTCGAACCAGTCTTCACAGACTGCATGCCCGATGCAGTTTTCTCTAGCCCTTTAACCCTCCGAGCTTTCCTTTCGGTTTGGCGTG
TAGATCTCACAGCTGAAGTCACCGAAAGAAGCTCCTCCTCCTCCTCCTCCAGAGGCTCAACATCTTGTTTCTCTGGTGTCAAATCATCAGACGA
CTCTTTGTTACATTTAGGTGCAGGTGCAGTGGCTCTATCACTCACAACTCCAGCGTCCGAAACCGCTAGATGCCCCAGTATGCCAGCACGCTCC
TTCTCGGTGAACTGGTCCCACTTGGAGCGTTTGTCGGGTGTTGATGATACTGATAGTTTCGAGTTGTGAGTGTTTTTGAATAAAGTGC

Primers for UN04022 SSR

Primer pair	Forward primer (5'-3')			Reverse primer (5'-3')			Product
Primer pair	Sequence	Temperature	Size	Sequence	Temperature	Size	Size	Start	End
1	CACAGCTGAAGTCACCGAAA	60.025	20	TGATAGAGCCACTGCACCTG	60.008	20	127	1230	1356
2	CACAGCTGAAGTCACCGAAA	60.025	20	GACGCTGGAGTTGTGAGTGA	60.03	20	144	1230	1373
3	TCTCACAGCTGAAGTCACCG	60.178	20	TGATAGAGCCACTGCACCTG	60.008	20	130	1227	1356