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Simple sequence repeat (SSR)
>UN44448
CTTTTTAATATGTCAATCTCGTTTATAAAATTAAGTAGCCTCCCTCTGTATCTTCTTCTTATTGTGATTGATGATGATGATGATGATGGGAAAA
AAACGTAGATTGATGATGATGATGGAAGAAGGGCTGCCCCACGACGTGGTAGAGCACATCATGGAGAGACTTCCGGTGAGATCTCTGCTGAGAT
TCAAGTGTGTATCAAAGCAATGGAAATCAACGATCGAATCACGAAACTTCCAAGAGAGGCAGTTGAAGCATGAGGAGTCAGGAGGAAGAGATCC
GGATGTTCTCATGGCGACGGAAAGTAGTCAAAGAAGATATGTACTGGGTTCGTCCTCATCGGTCAAAATCCCTAATCCTTGGGGTAAGGAGAAC
CCAACAACAGGCTACTTTGTGTCCGATAATAGCTGTGACGGTCTCGTTTGCCTCTACCATCCCTTGGAATCCGGTTATGTCTTCAACCCCGCCA
CGAGATGGTATCGACCTCTCCCTCTCTGCCAATTGCAACAAGTCAGGATCAGCCAAGGAGAGAGTTACTTTGAGCTTGGGCACGGCCTCTTTAA
GCTTGGATTCGGCAAAGACAAGATAACATCTACTTACAAGCCTGTTTGGCTATACAACTCTTCAGAAATAGGCCTTGACAACGCTACCACATGC
GAAGTTTTCGACTTTGGCGCCAATGCTTGGAGGTATGTCACTCCCTCTGCTCCTTATCGGGTTGTTGGGGTCGCCGATCCCGTCTTTGTACACG
GTTCGCTTCATTGGCTCACAGATTGCGTGGAAACCAAGGTTGTATCTTTTGATCTTCACACGGAGGCTTTTCAAGTCGTCTCTTCTAAAACTCC
CTTTCCCGCCAATTCACATGATGAGAATCCTTACTCGATCATCTTGTGCAACCTCGACAACCGTCTGTGCGTGTCACACATGAAGTGGCCCGAC
CAAGTCATATGGTCCTTCAATTCAGGCAACAAGACTTGGGAAAAACTTTACTCCATCGATCTGGTTATGAATTCTTGTTGTTTTGATTGCTCAA
CAATATGCGCCTTCCGTCCACTACTACTTGTGGATGGAGGAAAGAAGAAGAAGAAGAAGAATTTGCTCTTTTATGACACTGTATCAAGTCCATA
TCTGTTGATACATGACCCCGAAATCCAGCCAGACTTATTTACTTTCAGGTGTGCTCAAGTCATGAGATTTCTTGTTTGTTATTTCCAGAGTTTA
ATCTCTATTTGATTTCTTTTTTTTTTCCAAAATTAACTTTGGGTTTTGTCTCTCCAGGCTGACTTCTTTTGTTTCCAGGTTTCTTGTTCTTGTT
AGCTTTCTTCTTTTGTGTTTTGGTTGTTCAAAGTTAGATACCCTTCTTCTCATGCGACACCAACAATACTTCTTAGTAAACAGTCTCATGCATG
CCTTGTATAAATATGTTTGTGTCGGTTCACACTTTCAATTGTTTGTATCAACAACATAGGCATTCTACTTGAATAGATAGTTACATGTTTCTCC
C |
Primers for UN44448 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
GCCTCCCTCTGTATCTTCTTCTT |
59.416 |
23 |
TCCTCCTGACTCCTCATGCT |
59.945 |
20 |
237 |
38 |
274 |
| 2 |
GCCTCCCTCTGTATCTTCTTCTT |
59.416 |
23 |
GCTTCAACTGCCTCTCTTGG |
60.134 |
20 |
220 |
38 |
257 |
| 3 |
GCCTCCCTCTGTATCTTCTTCTT |
59.416 |
23 |
CCATGATGTGCTCTACCACG |
60.136 |
20 |
121 |
38 |
158 |
|
|
