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Simple sequence repeat (SSR)
>UN47467
GGAAAAGTAGCCGCCTCATCTTCATCGTCTCACCTCCTTGGCTCTCTCTCTCTCGATGGGATGCCCGATTTAAGGGTTTCGTTCGATTTATCTA
TCGATTTGACCATCGCCACAACGCTCTAGACTCTTCCTGTTTTAAAAGACAGTTTCTTTTTTGAGAATTATTATGCCTAAAGAGAGGAAAGACC
GATCTGTATCTCATGAAAGGTTAAGAGCATCATCATCGCCTTTGTATTGTGAGTCAAGCCGTGCTTTGAAGAAGCCTAGTGAGAAGCAAGTTAA
GGAATGGGAAGAAGCTCGTTGTCCTGTCTGTATGGAACATCCTCACAACGGCATCCTTCTCATTTGCTCTTCCTTTGATAAAGGTTGCCGTCCT
TACATGTGTGGTTGGCTTACGGTGTTCTTCCTCATCCGTGTGTTTAGACCAGAATCGAGTGGTGGTGGATCAAGGAGTAGTAGCTGGTCTGGGA
CGTCTAGAGCTAGGTCTCATATAGGTGTGAGGAGAAGATCTTCAAGGCTTTGGGGAGAGAGCTATGAAGGTGATACGGGAACATCATCTAGAGA
TAGAGATGAAGAGAACAACAATCAATCTTCTGATGAACAAGAGTCTTCTAGACGTCGTGTACGTAGAAGAGCTTTCATCGCTGATGATGATGAT
GATGAAGAACCTTGATGACTCTTTGGTGTTTATGCAAAGAAAATGGTGGAAACTTTGTAGTAATAATGAAACCTATTCTGTAAAATTTTGTTGA
AGATTTGAGAAAAAGCTTATTTTTTTTAATTGAGAAACAAAATGTTCAATAATAATTTTTACCATTTTACAAAACCTTTACAACATTGAAAAGC
TTGAAAAATGAACATGTTTAAGCAGAAGTAGCTGGTTCTGAAGAAGCTGCTGCTGCTGCTGCATCAGCTCTCTTCTTTGCAAAGTATTCATCAG
CACGTGCAAGGTTCTTTGCAACTGAAGGCTTCACCCATTTCTTTCTTCCGGGCAGCACTGTGAGTGTACAACCTGAAGCTTCGAGCTTCTCTTT
GGCTGATGTTGAGAATGCACGAGCTTTGAAGTTGAGCTTCACGCTTAGTTCTCCAGTACCAAGAATCTTAAGAGGGAGTTTCCTTTCCCTTCCA
GAAGGATTGATCAAACCCTTTAGCTTCAAAGTCTCTAGTGACACTTCATCTCCATCTTCAAACCCAGCTGTTTCAATGTCTTTAAGATTAACTG
GTACGTACTTAGGTAATCCTGAACGCATACCTCCGGCGATTCCTCGAAGTTTGGGAAGACGGCGATAAAGAGCGGTTTGACCACCTTCAAAACC
TCTCATGATTCCAGGACCAGATCGTGACTTCTGACCTCTCATCCCGAAACCACAGCTCGCTCCTTGTCCTGCAGAGATACCTCTACCTTTCCTC
TTCGCCCTCTTCCTCGACCCAGGTTGTGGTCCCAGATTATCCAGACGGAACCTCTCTGACGCTGCTGGAGAAGAAGAAGAAGAAGAAGACGACG
TTTGGTTGAACACAACAAGGGGTCCCGTTCGACGCTTGTGGTGGAGTTTCAGAGAAAGAATGTGACGTGGGTTTGCTCCTAAGACGCTCACATT
TCCCTTAAATGAAGTGGAAGGGAAGCAGGGGCGGGGACATTGGCGGGAGATGGGAAGATTTGTTGAGATAGAGAGTGGAACAGCCATGGAGGGC
ACACACCAGCAGATGAAAAGCTTAGAAGATAAGGTCGACGATC |
Primers for UN47467 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
CCAGGACCAGATCGTGACTT |
60.112 |
20 |
TGTGAGCGTCTTAGGAGCAA |
59.74 |
20 |
270 |
1327 |
1596 |
| 2 |
CCCAGATTATCCAGACGGAA |
59.887 |
20 |
TGTGAGCGTCTTAGGAGCAA |
59.74 |
20 |
156 |
1441 |
1596 |
| 3 |
CCCAGATTATCCAGACGGAA |
59.887 |
20 |
CCATGGCTGTTCCACTCTCT |
60.261 |
20 |
247 |
1441 |
1687 |
|
|
