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Simple sequence repeat (SSR)
>UN04501
CTGATACTCTCCTCCTAATCTCTAATATTCAGATCCAACAACTCTAGATATTCCATCATCTTTCTTGCATCATCCTGCTCAACTCTCACGTTCT
TACTCTGTCCATGAATGAGAAACGAAGATCCACCGTTAGTTCGATACCAAAGATGCGTTCTCTTGCGGCTATTGTACTCCTTCTCAGCTTCAGT
TCATGTTATTCTCTTAAGGAAGAAGGTTTAGATAAAGATAGATTAGAGAAAGATCTTTGGTCTGATGAAGATTCTGCGATTCTGAAAGCTGTTG
GGTTTCACAGGAAAGCACTTGCACCTCGTAGCCCAGTATCATACGACAAGTTGCCTTCCAGAAGAAACAGCAGTGAGGCTGGGGCTGCAACTAT
CACTCCACCATCATCATCCCCACAACCTTCTCAAAAGAATGTCTCAACTCAATCCTCAACAGCTTTGGATCCAGGAACTACACAAGATGTTTCT
CCTTCACCTCCTCCTCCTCCTCCGTCTGTTCCCGAAGCAAGCTCTCCCACTCCAAGAACCTCTGCTTCTTCTTCTTCTTCTTCTTCCTCTTCTT
CAGTGGTTGGTCCTGTAGTTGCTGCCTGCGTAGGCGGTGTTGTTCTTATCATCCTTGTAGCTACCGGTGTGTTCTACTTCAGAAGAAAAGTAGG
GAAGTCAGTGAATCCTTGGCATACAGGTCTTAGCGGTCAACTTCAGAAAGTCTTTGTAACTGGTATCCCCACTCTAAAAAGATCTGAGATTGAA
GCTGCATGTGAAGACTTTAGTAACGTCATTGGATCATGTCCTATTGGTAAACTCTTCAAAGGAACGCTATCAAGTGGAGTGGAGATAGCTGTCG
CTTCTATTAACACTACTTGTGCCAAAGACTGGAAAGACAATACAGAGATTCAGTTCAGGAAGAAGATTGAGATGTTATCCAAGATAAACCACAA
GAACTTTGTAAACCTTCTTGGCTACTGCGAAGAAAACGAACCTTTCACCAGGATCTTGATCTTTGAGTATGCTCCAAACGGTTCACTCTTTGAA
CATCTACACAGTAAAGAATCAGAACACTTGGATTGGGGAATGAGGCTAAGAATCTTAATGGGGTTAGCATATTGCCTTGACCACATGCACCAAC
TCAGCCCACCGATAGCTCACACAAACCTCGTCTCATCATCACTTCACCTCACTGAAGACTACGCTGTAAAACTAGCCGACTTCAGTTTTGGTCC
GTCCGAGGCAGAGACGTGCGACAACGCTAACAAAGACATAGACATAAACCCTGAAGACAACGTTTACAGCTTCGGTTTACTACTATTCGAGATG
ATAACCGGGAAACTCGTGGACTCGGTTAACAAACCAGACTCGGTAGATACGGGGCTAGTTGATTTCTTGAGAGGAGAGAGTCTAGCCAAGATGG
TTGATCCAGCGCTGGAGTCTTGTGATGACAAGATTGAGAATATAGGTGAGGTGATCAAGTCATGCCTTAGGACCGACCCGAAAGAGAGGCCTAC
GATGAAAGAAGTCACGGGGTGGTTACGGGAGATTACGGGCATCTCACCTAGCGATGCTACACCGTCACTATCGCCTCTTTGGTGGGCAGAGTTG
GAGGTTTTGTCTATTGCGTAAGAGAGAGAGTCACCAACAAGAACTGTAAGTATGTTGGAAGACGTGTGAGTTTTGTAAGTGTGTTTTTGTAGTT
GTCTACTCAAATATGATAAAAAAAAAAAACTGAAGATGCTTGTTTTTGGCTTCAGTTCAAGTTACGTAAATCTATAATTAGTGTATTTATTGGA
GTTATAGATGAACGTTG |
Primers for UN04501 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
CATCATCCCCACAACCTTCT |
59.779 |
20 |
CTACGCAGGCAGCAACTACA |
60.217 |
20 |
210 |
388 |
597 |
| 2 |
CATCATCCCCACAACCTTCT |
59.779 |
20 |
TACGCAGGCAGCAACTACAG |
60.217 |
20 |
209 |
388 |
596 |
| 3 |
CTGGGGCTGCAACTATCACT |
60.277 |
20 |
CTACGCAGGCAGCAACTACA |
60.217 |
20 |
237 |
361 |
597 |
|
|
