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Simple sequence repeat (SSR)
>UN04555
CAAGTAGGGTTGATCCTTAAAAATACTAAAATCATCCATACACAACAAATAATGGAACACCAAAGGAAAGCGACTAGTAGGAGAGGAGGGGTTA
AAGAGCTGCTGCCACTAGTTAATACCATCGACGAAAAAGAGTTACAGTCACATTCACCATCAACCTTAGTGAAAGTAAGCAGGAGGAGGAGCCT
GGTACTGATAGCAGTTCCCGTAGAAGTTCCCATGAGCAGCAGCAGCTGGACTGAAAGTATAAGTCTGAGGAGGTTGTGCTGCCATGATTGGACC
GCTAAGGAACGGTCTGTTGTCATACACATACTGAGGATACCTCTCAGGTATCACTCTACCATATCCAGTCTTGCTGTTATTGTTGTTGTTGTTG
TTGTTGTCAGTGGCCCGGGGTTGAGGACCACGTGGTCGCTTTGTCTGAACCTTTGTGGGTTCTGTTGCCCTCTTTTTCTCAGCTTTGGCCTTCT
CCAGCTGGAGAATCCTTTTGTGAAGTGGCTCAACTGGGTACTGCTCTTCCAGGTTATGCTCTTCCACACACTTTATCACAGCCTTCAGACCAGT
AAGCTCCCTCTCATTGAACTCATCCTGAACAGCAGGAGATGCATTTCCAGATCTGCCTTGAGAGGAAGATCTACTTGCCTCAGTCAAGTAACAT
TTAAGTAACTCAACAGGTGGGAACTCTTCTGTGAGTCCAAACGCAAATGCCAAGTTCACAGCATCAATCTGTTTACCACTGTTCACCAGAACTT
CAATCACACCAGGCATTTTTTCAGACAATCCAAGAGAACG |
Primers for UN04555 SSR
| Primer pair | Forward primer (5'-3') |
Reverse primer (5'-3') | Product |
|---|
| Sequence | Temperature | Size | Sequence | Temperature |
Size | Size | Start | End |
|---|
| 1 |
AGTAAGCAGGAGGAGGAGCC |
59.979 |
20 |
GCAACAGAACCCACAAAGGT |
60.012 |
20 |
277 |
168 |
444 |
| 2 |
TGATTGGACCGCTAAGGAAC |
60.074 |
20 |
GCAACAGAACCCACAAAGGT |
60.012 |
20 |
172 |
273 |
444 |
| 3 |
TGATTGGACCGCTAAGGAAC |
60.074 |
20 |
GAGCAGTACCCAGTTGAGCC |
59.874 |
20 |
244 |
273 |
516 |
|
|
